Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0423
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.6  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   8.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   8.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 354 ECLNPWRDDTEEEELA 401
           + L  W DD++EEEL+
Sbjct: 34  QMLGIWADDSDEEELS 49


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 41  WSLHKKKSRRKW*TSATPV 97
           +S HK+K R +W T A  V
Sbjct: 137 FSYHKQKLRLRWGTGAVTV 155


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 386 FSVITPWVETFIIIRFICAIHN 321
           +  ITP ++  + I   C +HN
Sbjct: 312 YKYITPLIQKHLKIHDTCGVHN 333


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +3

Query: 336 YEPNDDECLNPWRDDTEEEELARAVQNAAITEG 434
           ++P D+EC          E   R   N+ IT G
Sbjct: 199 WQPEDEECTEATAGAVVLETCQRNSNNSTITAG 231


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 69  GSGELAQHLLKSGVTRNEMIAAIT 140
           G+GE    + K+G TR   + A T
Sbjct: 46  GTGEFEAGISKNGQTREHALLAFT 69


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 69  GSGELAQHLLKSGVTRNEMIAAIT 140
           G+GE    + K+G TR   + A T
Sbjct: 62  GTGEFEAGISKNGQTREHALLAFT 85


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 69  GSGELAQHLLKSGVTRNEMIAAIT 140
           G+GE    + K+G TR   + A T
Sbjct: 119 GTGEFEAGISKNGQTREHALLAFT 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,668
Number of Sequences: 438
Number of extensions: 3815
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)