Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0423
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 93 1e-19
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 92 3e-19
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 85 6e-17
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil... 56 3e-08
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 51 9e-07
At1g74560.1 68414.m08638 nucleosome assembly protein (NAP) famil... 47 1e-05
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 32 0.43
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 31 0.57
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 30 1.3
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 30 1.7
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 29 3.0
At4g17020.2 68417.m02567 transcription factor-related contains w... 28 5.3
At4g17020.1 68417.m02568 transcription factor-related contains w... 28 5.3
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 5.3
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 5.3
At2g24700.1 68415.m02951 transcriptional factor B3 family protei... 28 7.0
At2g26530.1 68415.m03183 expressed protein 27 9.3
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 93.5 bits (222), Expect = 1e-19
Identities = 66/180 (36%), Positives = 89/180 (49%)
Frame = +3
Query: 153 AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNG 332
++ + +L PNVR+R+ ALR +Q + ++EAKF E R IVNG
Sbjct: 41 SDVLENLTPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNG 100
Query: 333 TYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYN 512
T E L P DDT+ + +GEEK ++ KG+P FW
Sbjct: 101 TTEVE----LAP-EDDTK------------VDQGEEKTAEE----------KGVPSFWLT 133
Query: 513 IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLM 692
+N ++SE + E DE LK L+DIK E+P F LEF+F N YF NTVLTK Y M
Sbjct: 134 ALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTNPYFKNTVLTKSYHM 193
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 92.3 bits (219), Expect = 3e-19
Identities = 63/181 (34%), Positives = 87/181 (48%)
Frame = +3
Query: 150 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 329
H++ + +L P VR+R+ LR +Q ++ ++EAKF+ E A R IVN
Sbjct: 40 HSDVLENLTPPVRKRVEFLREIQNQYDEMEAKFFEERAALEAKYQKLYQPLYTKRYEIVN 99
Query: 330 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWY 509
G E V+ AA E+ +DK+ E KG+PDFW
Sbjct: 100 GVVE----------------------VEGAAEEVKSEQGEDKSAEE------KGVPDFWL 131
Query: 510 NIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYL 689
+N + +E + E DE LK L+DIK E+P F LEF+F N YF NTVLTK Y
Sbjct: 132 IALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFFFDQNPYFKNTVLTKTYH 191
Query: 690 M 692
M
Sbjct: 192 M 192
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 84.6 bits (200), Expect = 6e-17
Identities = 59/181 (32%), Positives = 85/181 (46%)
Frame = +3
Query: 150 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 329
H++ + +L P +RRR+ LR +Q + +IE KF E A R IVN
Sbjct: 40 HSDVLENLTPKIRRRVEVLREIQGKHDEIETKFREERAALEAKYQKLYQPLYNKRYEIVN 99
Query: 330 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWY 509
G E+ A ++A + +G+EK ++ KG+P FW
Sbjct: 100 GA------------------TEVEGAPEDAKMDQGDEKTAEE----------KGVPSFWL 131
Query: 510 NIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYL 689
+N ++SE + E DE L L+DIK E+P F LEF+F N YF NT+LTK Y
Sbjct: 132 TALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLEFFFDQNPYFKNTLLTKAYH 191
Query: 690 M 692
M
Sbjct: 192 M 192
>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
protein similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 329
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +3
Query: 486 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPI-SFTLEFYFAPNEYFT 662
+G+P+FW + ML+ + E DE LK L+DI+ ED +F LEF F N YF
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVEDTSRNFKLEFLFDSNLYFK 185
Query: 663 NTVLTKEY 686
N+VL+K Y
Sbjct: 186 NSVLSKTY 193
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 50.8 bits (116), Expect = 9e-07
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 483 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 659
+K IPDFW F + L E++ E D+ I K L + V+ +D S +++ F F PN +F
Sbjct: 70 IKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSITFSFNPNPFF 129
Query: 660 TNTVLTKEY 686
+ LTK +
Sbjct: 130 EDGKLTKTF 138
>At1g74560.1 68414.m08638 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105 SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile:
PF00956 nucleosome assembly protein (NAP)
Length = 256
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 483 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 659
++ IP FW F + L +++ E D+ I K L ++V+ +D S +++ F+F N +F
Sbjct: 74 IQSIPGFWMTAFLSHPALGDLLTEEDQKIFKYLNSLEVEDAKDVKSGYSITFHFTSNPFF 133
Query: 660 TNTVLTKEY 686
+ LTK +
Sbjct: 134 EDAKLTKTF 142
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 31.9 bits (69), Expect = 0.43
Identities = 21/77 (27%), Positives = 39/77 (50%)
Frame = +3
Query: 375 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 554
D T+E EL AV+NA++ GE+ + IE K IP Y I+ + + +
Sbjct: 442 DKTDEAELQSAVENASLLLGEQ--GTRVIEYTSYAETKTIPGH-YVIYWELLVKDQTNPP 498
Query: 555 HDEPILKCLQDIKVQMH 605
+DE + +C +++ ++
Sbjct: 499 NDEVMARCCLEMEESLN 515
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 31.5 bits (68), Expect = 0.57
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +3
Query: 375 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 554
DD +++E A N + ++++DD+ EP M V+ W N+ + L+ +
Sbjct: 21 DDDDDDETAVEPINMDEFDDDDEEDDEDYEPVMLGFVESPKFAWSNLRQLFPNLAGGVPA 80
Query: 555 HDEPI-LKCLQDIKVQMHEDPISFTLEFY 638
+P+ L + I + E+P+ F L+ Y
Sbjct: 81 WLDPVNLPSGKSILCDLCEEPMQFVLQLY 109
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 375 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 494
DD +EEE + + +I E EEK D +E P D N+K +
Sbjct: 43 DDDDEEEAVSELNSLSIKE-EEKPDS-ILEEPEDSNIKAV 80
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 336 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 485
+E N+ +E ++ +R + E+L + VQN A+ +EKK+D P D NV
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = +3
Query: 327 NGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFW 506
NG E NDDE N + +EE +N+ G E ++ + M+ N G+ +
Sbjct: 197 NGNDEENDDE--NTEENGNDEENEKEDEENSMEENGNESEESGNEDHSMEENGSGVGEDN 254
Query: 507 YNIFRNVSMLSEMMQEHDE 563
N +VS E ++ +E
Sbjct: 255 ENEDGSVSGSGEEVESDEE 273
>At4g17020.2 68417.m02567 transcription factor-related contains weak
similarity to Swiss-Prot:Q92759 TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit, BTF2-p52, General
transcription factor IIH polypeptide 4) [Homo sapiens]
Length = 462
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 102 SGVTRNEMIAAITNRLH---AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 257
+G+T +++I + H A+ + S+P NV +IR T + +A FY E
Sbjct: 349 NGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDE 403
>At4g17020.1 68417.m02568 transcription factor-related contains weak
similarity to Swiss-Prot:Q92759 TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit, BTF2-p52, General
transcription factor IIH polypeptide 4) [Homo sapiens]
Length = 452
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 102 SGVTRNEMIAAITNRLH---AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 257
+G+T +++I + H A+ + S+P NV +IR T + +A FY E
Sbjct: 349 NGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDE 403
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 414 NAAITEGEEKKDDKAIEPPMDPNVKGIP 497
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 414 NAAITEGEEKKDDKAIEPPMDPNVKGIP 497
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
>At2g24700.1 68415.m02951 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 555
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 54 RRKVVGSGELAQHLLKSGVTRNEMIAAITNR-LHAEAMASL-PPNVRRRIRALRTLQKEF 227
RR V +G+ LLK + NE + L++E + L P N R ++L+ +KEF
Sbjct: 339 RRFCVANGKKPGDLLKFKLVHNEETPVLQLLPLNSEDLHKLNPSNDTRHGQSLKVTKKEF 398
Query: 228 VDIEA 242
+ +EA
Sbjct: 399 LGMEA 403
>At2g26530.1 68415.m03183 expressed protein
Length = 317
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 265 HSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 396
H+ ++K FTSLF K E +VS H + KK+
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,016,033
Number of Sequences: 28952
Number of extensions: 307119
Number of successful extensions: 985
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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