Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0422
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    26   0.25 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.57 
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   1.7  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   2.3  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   4.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.2  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 33  RCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSP 128
           R  R VVPP   C  P+T+ P P     D++ P
Sbjct: 195 RSLRCVVPPTEDCDVPSTIPPPPPEEDDDSNIP 227


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 291 WPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAAST 437
           +PPL    P      FP    +PS   +S AQ +  N + WV  + A T
Sbjct: 174 YPPLPQVPPLPLPPIFPPTMINPSAICESAAQLIFMNVQ-WVRSIPAFT 221


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 467 DVDIRKDLYANTVLSGGTTMYPGI 538
           D D+ KD     VL GG+T  P I
Sbjct: 150 DADMTKDQIDEIVLVGGSTRIPKI 173


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 289 LLLEVESDVAQLLLDVTNDFP 227
           L+ + E++  ++LLDV N FP
Sbjct: 465 LVYQNEAEEVKILLDVINHFP 485


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 634 DPYGVLPLWRSNDLN 590
           DPYG++  W ++ LN
Sbjct: 143 DPYGLVAQWATDALN 157


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = -1

Query: 100 HGVGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 2
           HG    V G+         ++  +H LD D  G
Sbjct: 600 HGYAFNVVGIGRSPDQNVKKINLKHALDLDRRG 632


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 145 QTQDGVGECVSLVDGH 98
           Q+ D +G C S+ D H
Sbjct: 652 QSDDNLGSCGSMGDAH 667


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 145 QTQDGVGECVSLVDGH 98
           Q+ D +G C S+ D H
Sbjct: 544 QSDDNLGSCGSMGDAH 559


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,987
Number of Sequences: 336
Number of extensions: 4246
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)