Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0422
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 404 e-114
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 223 1e-59
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 222 4e-59
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 116 4e-27
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 110 2e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 85 9e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 58 1e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 56 4e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 42 1e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 33 0.029
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.087
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 31 0.20
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.1
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 28 1.4
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 2.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.5
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 26 4.3
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.3
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 5.7
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 5.7
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 7.6
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 7.6
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 7.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.6
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 10.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 10.0
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 404 bits (994), Expect = e-114
Identities = 191/213 (89%), Positives = 201/213 (94%)
Frame = +2
Query: 2 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 181
A YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLM
Sbjct: 131 AFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLM 190
Query: 182 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITI 361
KIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITI
Sbjct: 191 KILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITI 250
Query: 362 GNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 541
GNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIA
Sbjct: 251 GNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIA 310
Query: 542 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 640
DRMQKEI ALAPS+MK+KI+APPERKYSVWIGG
Sbjct: 311 DRMQKEIQALAPSSMKVKIVAPPERKYSVWIGG 343
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 223 bits (546), Expect = 1e-59
Identities = 110/223 (49%), Positives = 154/223 (69%), Gaps = 11/223 (4%)
Frame = +2
Query: 5 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 184
+YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+
Sbjct: 132 VYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLIS 191
Query: 185 ILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIG 364
+L +GY+F TA+ E VR++KEKLCYV+ D E + + ++ L ++Y LPDG+VI +G
Sbjct: 192 LLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVG 251
Query: 365 NERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIAD 544
+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY VLSGG++MY G+
Sbjct: 252 SERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPS 311
Query: 545 RMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGG 640
R++KEI L P+ + K+KI P R+++V+IGG
Sbjct: 312 RLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGG 354
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 222 bits (542), Expect = 4e-59
Identities = 100/213 (46%), Positives = 145/213 (68%)
Frame = +2
Query: 2 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 181
A+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 136 ALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQ 195
Query: 182 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITI 361
L + G+ ++AE+EIVR+IKEK CYVA DF E+ + +Y+LPD Q IT+
Sbjct: 196 LQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITL 255
Query: 362 GNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 541
G E F PE LF P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G
Sbjct: 256 GTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFG 315
Query: 542 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 640
+R E+ A++ ++KI A PER ++ W+GG
Sbjct: 316 ERFISELRAISGKKNQVKIYASPERMHNAWLGG 348
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 116 bits (278), Expect = 4e-27
Identities = 73/201 (36%), Positives = 109/201 (54%), Gaps = 15/201 (7%)
Frame = +2
Query: 5 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 160
+Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I + LAGR
Sbjct: 155 LYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGR 214
Query: 161 DLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMA--TAASSSSLEKS 328
D+T ++ +L +R S TAER IKE+ CYV D +E + L+ +
Sbjct: 215 DVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDREPDRYLKYA 269
Query: 329 YELPDGQ--VITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYAN 499
E G I +G ERF PE F P + + E N + +D+RK LY N
Sbjct: 270 SESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKN 329
Query: 500 TVLSGGTTMYPGIADRMQKEI 562
VLSGG+T++ +R+Q+++
Sbjct: 330 IVLSGGSTLFKNFGNRLQRDL 350
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 110 bits (264), Expect = 2e-25
Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 20/204 (9%)
Frame = +2
Query: 62 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 241
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVN 216
Query: 242 DIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------GQVITI 361
+IKE +CYV+ +F+++M S LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 362 GNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 541
NERF PE LF PS + + GI E S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 542 DRMQKEITALAPSTMKIKIIAPPE 613
R+ E+ +LAP+ ++K+ P +
Sbjct: 337 KRLSSELRSLAPANWEVKVFEPSD 360
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 85.0 bits (201), Expect = 9e-18
Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 11/156 (7%)
Frame = +2
Query: 206 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 385
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 386 EALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 538
E LF PSF + G+HE Y SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 539 ADRMQKEITALAP-STMKIKII-APPERKYSVWIGG 640
++R+Q E+ LA S + + +VW GG
Sbjct: 360 SERLQAEVQRLATGSRINVHTAETASATSNAVWFGG 395
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 58.0 bits (134), Expect = 1e-09
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Frame = +2
Query: 428 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 607
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 608 ---PERKYSVWIGG 640
ER Y+ W+GG
Sbjct: 385 GHVVERSYASWLGG 398
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 2 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 181
A Y+A Q + +ASG+ T ++D G S IY+G+ L +G + D L
Sbjct: 129 ATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILA 188
Query: 182 KILTERGY 205
+ L ++ +
Sbjct: 189 QTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 56.4 bits (130), Expect = 4e-09
Identities = 24/90 (26%), Positives = 48/90 (53%)
Frame = +2
Query: 368 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 547
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 548 MQKEITALAPSTMKIKIIAPPERKYSVWIG 637
+++E+T++ P I + W G
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKG 683
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Frame = +2
Query: 17 IQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 190
I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G + YL+K+
Sbjct: 151 IDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLF 210
Query: 191 TERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 325
+ SF + C+V+ D+ ++A A LE+
Sbjct: 211 QIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDILER 255
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/81 (29%), Positives = 41/81 (50%)
Frame = +2
Query: 11 VAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 190
+A + ++ LYA G G+V+D G + PI +G + A +L L GR +T +L +L
Sbjct: 180 IAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLL 239
Query: 191 TERGYSFTTTAEREIVRDIKE 253
E + ++ + DI E
Sbjct: 240 RESLPTLKSSGQYVSKEDITE 260
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.5 bits (73), Expect = 0.029
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +2
Query: 482 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIG 637
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKG 581
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/64 (20%), Positives = 34/64 (53%)
Frame = +2
Query: 20 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 199
+++ + + +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339
Query: 200 GYSF 211
+ +
Sbjct: 340 HFPY 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.087
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +3
Query: 3 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 137
P T+P P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 30.7 bits (66), Expect = 0.20
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 234 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 404
+F +R S A + SS R P +P+AP+R PTV++S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 24 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 128
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 270 LSTSSRRWPPL--HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWV 416
LS + WP L HP P R P++ + P +T S + S +P S+V
Sbjct: 107 LSDLQKHWPSLKPHPLPPKRVSLGIPSISNPPVDTVISDSP-TSPHPPSFV 156
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 255 SCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRS 410
S ++ TS R PP + + SL N P RSS E D V + P++
Sbjct: 40 SPVSTARTSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQT 91
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 24 PCSRCTRPVVPPVSCWTPATVSPTPCPST 110
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.5
Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 5/133 (3%)
Frame = +3
Query: 3 PCTSPSKPCSRCTRPVVPPVSCWTP----ATVSPTPCPSTRDTHSPTPSCVWTWPVVXXX 170
P PS P P +PP + P + P P P P+ PV
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIA 492
Query: 171 XXXXXXXXXXXXXXXXXXXGKSFVTSRR-SCATSLSTSSRRWPPLHPAAPSRSLTNFPTV 347
G + SR+ S + S++++ PP+ A PS +L + +
Sbjct: 493 ELPQQDGRANLMASIRASGGMDLLKSRKVSASPSVASTKTSNPPVE-APPSNNLMD--AL 549
Query: 348 RSSPSETKDSVAQ 386
S+ ++ K VAQ
Sbjct: 550 ASALNQRKTKVAQ 562
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 PCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 137
P T S S P VPP S T + PT ST SP P+
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 PCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 137
P T S S P VPP S T + PT ST +P P+
Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +3
Query: 9 TSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 137
T S S P VPP S T + PT ST SP P+
Sbjct: 237 TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 580 DN-ED*DHCSSREEVLRMDRWDRSSPSSLPFN 672
DN E+ D+ + ++LR+ +WD + P PF+
Sbjct: 569 DNLENDDYVLALRDLLRISKWDPNQPVPAPFD 600
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 294 PPLHPAA-PSRSLTNFPTVRSSPSET 368
PP HPA+ SR + ++ TV+SSPS T
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT 99
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 6 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 149
C +PS+ C + PV + T S TP P+T + +PTP+ T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 303 HPAAPSRSLTNFPTVRSSPSETKDSV--AQRLSSNPR 407
HPA+ SLTN ++ + P+ D + S +PR
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMIDLTDETSYDPR 167
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 367 VSDGDDLTVGKFVRLLEGAAGCSGGHLLLEVESDVAQLLLDV 242
V+ GDD++VGK L G G L+ ++ A L LD+
Sbjct: 135 VAVGDDVSVGKKRGALVGRRGLGATVLVHKIAGSAAALGLDL 176
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -1
Query: 154 GQVQTQDGVGECVSLVDGHGVGDTVAGVQHDTGGTTGR 41
GQ + G G G G GDTV GG GR
Sbjct: 122 GQNVQRGGRGGRYGSSGGRGAGDTVVSRSSGAGGARGR 159
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 7.6
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Frame = +2
Query: 275 DFEQEMATAASSSSLEKSY--ELPDGQ-VITIGNERFRCPEALFQPSFLG-MEACGIHET 442
D E++ SS+ + +Y + + Q ++T+ NE + E L S + E+
Sbjct: 108 DDHPEISGHVSSNDKDFAYFEDKSENQPLVTLPNENNQVIEPLSSQSCKSQLSTQNYSES 167
Query: 443 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY 622
+ CD+D ++ + + T ++P AD I ++K A RKY
Sbjct: 168 DFGWNQLCDLD---PIFKSLAFTDDTNLFPAFADSEAALIMLKKREMTRVKHRAGRPRKY 224
Query: 623 S 625
S
Sbjct: 225 S 225
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 7.6
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 18 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTRDT-HSPTPSCVWTWPV 158
S+ S T P PP + T PA SP P P +T H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPP-PKVGETYHPPTASGTRVPPV 948
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 7.6
Identities = 23/82 (28%), Positives = 40/82 (48%)
Frame = +3
Query: 234 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSW 413
S V+S S TSLSTS + PA S + +V S +++ S + ++ +
Sbjct: 879 SVVSSSLSSTTSLSTSIPVTSSVAPAVTSTG-SETSSVVGSGTDSATSSSWTAETSSSAI 937
Query: 414 VWKLAASTRPHITPS*SATWTS 479
+AAS P + S +++W+S
Sbjct: 938 TSSVAASVTPTSSSS-ASSWSS 958
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 10.0
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +3
Query: 234 SFVTSRRSCA--TSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPR 407
S VTS S +SLS+S A+ S SLTN + S+PS T + +S
Sbjct: 497 SLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTS 556
Query: 408 SWVWKLAASTRPHITPS*SATWTS 479
S L S+ P I+ S +AT TS
Sbjct: 557 S---SLIISS-PIISSSLTATSTS 576
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 10.0
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +3
Query: 243 TSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWK 422
+S S ++SLS+SS ++ S +++ + SSP+ T +++ SS+
Sbjct: 245 SSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTS 304
Query: 423 LAASTRPHITPS*SATWTS 479
S+ + S S+T +S
Sbjct: 305 STISSSSSSSSSFSSTLSS 323
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 21 KPCSRCTRPVVPPVSCWTPATVSPTPCP 104
KP S+ TRP +P + T +V P P P
Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIP 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,155
Number of Sequences: 5004
Number of extensions: 65601
Number of successful extensions: 298
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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