Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0422
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             249   2e-68
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        27   0.16 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.66 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.1  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.1  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  249 bits (610), Expect = 2e-68
 Identities = 117/118 (99%), Positives = 118/118 (100%)
 Frame = +2

Query: 287 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 466
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 467 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 640
           DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGG
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGG 118



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +3

Query: 639 GSILAFLSTFQQ 674
           GSILA LSTFQQ
Sbjct: 118 GSILASLSTFQQ 129


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +3

Query: 252 RSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAA 431
           ++C TS +T+S     L  AA + +  N+    +SPS T  S     SS   S   +  +
Sbjct: 28  QACTTSPATASLE-SSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTS 86

Query: 432 STRPHIT 452
           S  P+++
Sbjct: 87  SMYPYVS 93


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +2

Query: 449 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 628
           N  +K D DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K  +
Sbjct: 342 NKELKYD-DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--I 396

Query: 629 WI 634
           WI
Sbjct: 397 WI 398


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 620 YSVWIGGIDPRLP 658
           Y VWI  +DP LP
Sbjct: 589 YGVWINCLDPNLP 601


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = +1

Query: 121 TP-PRHPASGLGRS*PHRLPHEDPHRARLLVHYH 219
           TP P H   G G S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 502 RIVRWYHHVPWNRRPYAK 555
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 502 RIVRWYHHVPWNRRPYAK 555
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 94  VGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 2
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 398 QPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 508
           + +FLG+    +   +YN +   D  + KDL+   +L
Sbjct: 328 ETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQIL 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,480
Number of Sequences: 438
Number of extensions: 4861
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)