Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0420
         (645 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.21 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.27 
UniRef50_A7CU42 Cluster: Flagellar motor switch protein FliM; n=...    34   3.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.9 bits (84), Expect = 0.21
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +1

Query: 52  VDELTAHLMLSGYWSP 99
           VDELTAHL+LSGYWSP
Sbjct: 160 VDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.5 bits (83), Expect = 0.27
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 221 AERWYLPVRTHKRSYHQ 271
           AE WYLP RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A7CU42 Cluster: Flagellar motor switch protein FliM; n=1;
           Opitutaceae bacterium TAV2|Rep: Flagellar motor switch
           protein FliM - Opitutaceae bacterium TAV2
          Length = 344

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = +3

Query: 279 ANYNFAGFTFITRCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGASLQHECTGRLIR*A 458
           A+     + F    +   VE+ R  LL   FIR +G+R+        L+ ECT R+ R  
Sbjct: 49  ADLRVEAYDFRNPVFLSEVELRRLRLLHDEFIRHLGSRI-----ALFLRMECTFRMTRLT 103

Query: 459 TTTHVVY 479
           T THV +
Sbjct: 104 TLTHVKF 110


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,944,040
Number of Sequences: 1657284
Number of extensions: 13160936
Number of successful extensions: 28318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28308
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)