Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0420
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   1.6  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.2  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   3.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.0  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    21   6.6  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    21   6.6  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +1

Query: 103 TSTTQMRHTP*DIVLRSQYSHNGCPTLQTETHYCFTAEIGG 225
           TS     H   DIV   Q  HN    L  E + CF  +I G
Sbjct: 196 TSLIHSTHLNGDIVKEHQNLHNKICNLIDEFNECFGLQILG 236


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 466 LTSYILFTAACLSCRVIRVIYITF 537
           L  +++FT+ C+   ++R+I   F
Sbjct: 175 LAKFMIFTSTCIYTNLLRIIEADF 198


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 270 SNYANYNFAGFTFITRCYSFTVEVNREHLLSTYFIRKIGTRLR 398
           S+Y N + A F F+ R     + +   HL     I K  ++ R
Sbjct: 413 SDYQNKSLAAFDFVARNSDTPIILWTSHLTQADVIEKYLSKAR 455


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 435 CIRVEAMHRCSNPAGGY 385
           C  + A H+C+ P G Y
Sbjct: 353 CTTIHAGHKCTCPEGFY 369


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +1

Query: 421 FNTNAPDVLSVRPRRLTSYILFTAACLSCRVIRVIYIT 534
           FN ++ +    +  +L  +  F A   +C V+ +++IT
Sbjct: 308 FNKSSSEENEGKTTQLDYFFTFWAFSNACEVMAIVWIT 345


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +1

Query: 421 FNTNAPDVLSVRPRRLTSYILFTAACLSCRVIRVIYIT 534
           FN ++ +    +  +L  +  F A   +C V+ +++IT
Sbjct: 308 FNKSSSEENEGKTTQLDYFFTFWAFSNACEVMAIVWIT 345


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,782
Number of Sequences: 336
Number of extensions: 3619
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)