Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0420
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   3.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   7.1  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   7.1  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   7.1  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   9.3  

>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
 Frame = +3

Query: 201  LLHGRNRRSGGTYPCGLTRGPTTSNYANYNFAGFTFITRCYSFTVEVN--REHLLSTYFI 374
            L +G  RR+G      +  G    N   Y FA  T         ++VN  R  L+S   I
Sbjct: 1260 LSYGHTRRNGERNRFSVVNGCFLGN--TYAFASVTQDGSVEVHRLDVNNQRHTLISAGRI 1317

Query: 375  RKIGTRLRDSNTGASLQHECTGRLIR*ATTTHVVYIIYGCMPLMSCNQ 518
              +      ++  AS  H+ + RL+     + +VY+  G M ++S +Q
Sbjct: 1318 PNLDFSDSVTSMEASTFHDGSIRLVVVTKWSRIVYLDVGMMRVLSSDQ 1365


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/79 (22%), Positives = 30/79 (37%)
 Frame = +3

Query: 216 NRRSGGTYPCGLTRGPTTSNYANYNFAGFTFITRCYSFTVEVNREHLLSTYFIRKIGTRL 395
           +R S G+Y   L     T+   +    G   +   +S+TV    E   +   I  +   L
Sbjct: 645 SRSSPGSYHLFLNGSRCTAGVRSLTDGGLLVLLNGHSYTVYYRDEVTGTRISIDNLSCML 704

Query: 396 RDSNTGASLQHECTGRLIR 452
              N    L+    G+L+R
Sbjct: 705 EQENDPTQLRTPSPGKLVR 723


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 422 KRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCNKSETRKIIICVITGGRTSC 252
           +RC+ + I   G+ F N I +   F+   HG+GI      ++R ++  +      SC
Sbjct: 219 RRCSKINI--TGSVFDNFIPS--FFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSC 271


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +2

Query: 476  IYYLRLHASHVV*SE*FTLLFYLLRQQIRKATTVLQ--KSYIFI 601
            I Y+R +   VV SE   ++F+L+ Q+I+++  V++   +YI++
Sbjct: 1002 IAYIRFYVDTVVNSENVPIVFHLM-QRIKQSYDVIEDGNNYIYV 1044


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 519 SNLHYFFIYYDSKFAKLRRCYKKVIYSFNF 608
           SNLH+FF+++   F    R +   +YS NF
Sbjct: 73  SNLHFFFLFWLLNFILFFRIH---LYSCNF 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,164
Number of Sequences: 5004
Number of extensions: 55328
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)