Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0420
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    34   0.11 
11_01_0706 + 5811722-5814025                                           29   2.4  
12_02_0794 + 23206796-23207590,23207620-23208148,23208444-232084...    29   4.2  
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    29   4.2  
03_06_0583 + 34901636-34901721,34901805-34901902,34902029-349021...    28   5.5  
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20...    28   5.5  
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453...    27   9.7  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -2

Query: 446 KTSGAFVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGE 327
           K  G  ++ RCTGV I   G N   +I T      DFHGE
Sbjct: 150 KKDGGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>11_01_0706 + 5811722-5814025
          Length = 767

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 480 IIYGCMPLMSCNQSNLHYFFIYYDSKFAKLRRCYKKV 590
           + YG +P+   N  NLHYF +  ++    + RC  K+
Sbjct: 483 MFYGHIPIKITNLKNLHYFSLAANNISGAIPRCLSKL 519


>12_02_0794 +
           23206796-23207590,23207620-23208148,23208444-23208468,
           23208775-23208837,23209136-23209157,23209369-23209482
          Length = 515

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 66  SPPDVKWLLEPIDIYNANAPHTLRYSSKVSV*SQRLPHPSNRNALLLH-GRNRRSG 230
           SP  V+W +  +++  A+AP  L+   +      R P P +R  L  H  R RR G
Sbjct: 206 SPSPVQWRMHRLEM-QADAPQALQMGERRRPPLARRPPPVSRRLLPWHPARRRREG 260


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 392 AGTNFSNEIRTQQMFTIDFHGEGITSC-NKSETRKIIICVITGGRTSCESARVGTTAPPI 216
           +GT+   +    ++  +D  G GIT+C  ++E +K    ++ G      + RV      +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 215 SAV 207
           +AV
Sbjct: 89  NAV 91


>03_06_0583 +
           34901636-34901721,34901805-34901902,34902029-34902167,
           34902262-34902290,34902406-34902502,34902593-34902648,
           34902759-34902866,34902988-34903044,34905585-34905679,
           34905822-34905998,34906086-34906189,34906595-34906664,
           34906774-34906833
          Length = 391

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 389 PPAGFEHRCIASTRMHRTSYP 451
           PP G +H CI + R H TS P
Sbjct: 304 PPTGDQHACIQALRDHWTSIP 324


>01_01_0026 +
           201042-201110,201252-201359,202511-202639,203164-203440,
           203543-203647,203730-203875,204042-204149,204290-204378,
           204552-205098
          Length = 525

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +1

Query: 253 QEVLPPVITQIIILRVSLLLHDVIPSPWKSIVNIC*VRISLE--KLVPACGIRTPVHRFN 426
           Q ++   +++I++   + L H+     + S +N C V+ SL+   + PACG + P H  +
Sbjct: 305 QNLIETSLSKIVLKDYNPLQHE---RGFHSRLN-CLVKDSLQFGSIAPACGAKDPHHLDS 360

Query: 427 TNAPDVLSVR 456
            + P +L+ R
Sbjct: 361 LSEPQILTFR 370


>05_04_0438 +
           21244735-21244782,21245089-21245274,21245307-21245384,
           21245385-21245678,21246137-21246262,21246935-21247168,
           21247534-21248061
          Length = 497

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 136 DIVLRSQYSHNGCPTLQTETH 198
           D++ RS   H   P  QTETH
Sbjct: 477 DVIRRSASGHEAAPPFQTETH 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,483,649
Number of Sequences: 37544
Number of extensions: 377445
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)