Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0420
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)           27   9.9  

>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 22/80 (27%), Positives = 32/80 (40%)
 Frame = -2

Query: 452  TDKTSGAFVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCNKSETRKIIICVI 273
            TD+T+ A + K  T   I   GT  +  I T     +       T+ + S        +I
Sbjct: 1002 TDETTSASMTKHATAAPITTNGTT-AEPISTDGTTVLSMSTARTTTASMSTAGTTAAPII 1060

Query: 272  TGGRTSCESARVGTTAPPIS 213
            T G T+      GTT  P+S
Sbjct: 1061 TNGTTAAPITTNGTTTEPMS 1080



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/80 (27%), Positives = 31/80 (38%)
 Frame = -2

Query: 452  TDKTSGAFVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCNKSETRKIIICVI 273
            TD T+ A ++   T V         +  I T          +G T+   S      + +I
Sbjct: 1740 TDGTTAASMITDGTTVSSISTDGTTAVPISTNGATAAPMSTDGTTAAPMSTDGTTAVPMI 1799

Query: 272  TGGRTSCESARVGTTAPPIS 213
            T G T+      GTTA PIS
Sbjct: 1800 TNGTTAVPMITDGTTAAPIS 1819


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/80 (27%), Positives = 31/80 (38%)
 Frame = -2

Query: 452  TDKTSGAFVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCNKSETRKIIICVI 273
            TD T+ A ++   T V         +  I T          +G T+   S      + +I
Sbjct: 2651 TDGTTAASMITDGTTVSSISTDGTTAVPISTNGATAAPMSTDGTTAAPMSTDGTTAVPMI 2710

Query: 272  TGGRTSCESARVGTTAPPIS 213
            T G T+      GTTA PIS
Sbjct: 2711 TNGTTAVPMITDGTTAAPIS 2730


>SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)
          Length = 686

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -2

Query: 416 CTGVRIP-QAGTNFSNEIRTQQMFTIDFH----GEGITSCNKSETRKIIICVITGGR 261
           C  + IP ++ TNF +   T    TIDFH    G  +   N S   +I   V T GR
Sbjct: 343 CRALGIPTRSVTNFKSAHDTDSSMTIDFHFDEAGTSMFGMNLSLRDQIFPLVTTDGR 399


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,314,582
Number of Sequences: 59808
Number of extensions: 441951
Number of successful extensions: 1058
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)