Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0420
         (645 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127994-1|BAC87220.1|  230|Homo sapiens protein ( Homo sapiens ...    31   4.6  

>AK127994-1|BAC87220.1|  230|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46112 fis, clone TESTI2035962. ).
          Length = 230

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +3

Query: 132 LRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGTYPCGLTRGPTTSNYANYN-FAGFTF 308
           LR S   S  S   P PS   A L H  N R+G T   G  R P  S+ ++   F G  F
Sbjct: 27  LRRSGAFSSGSTLKPPPSPSPAPLCHADNLRTGRTRSPGAARSPLKSSLSDPRPFPGHPF 86

Query: 309 ITRC 320
              C
Sbjct: 87  RRTC 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,159,645
Number of Sequences: 237096
Number of extensions: 2040428
Number of successful extensions: 3088
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3088
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)