Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0420
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    30   1.6  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    30   1.6  
Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z50858-3|CAA90723.1|  131|Caenorhabditis elegans Hypothetical pr...    27   8.6  
L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF067946-3|AAC17682.1|  288|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 192 NALLLHGRNRRSGGTYPCG 248
           +A L+ GRN+RSGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 192 NALLLHGRNRRSGGTYPCG 248
           +A L+ GRN+RSGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical
           protein T24C2.4 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +3

Query: 399 DSNTGASLQHECTGRLIR*ATTTHVVYIIYGCMPLMSCNQSNLHYFFI-----YYDSKFA 563
           D   G  ++H+ T +LIR  T   +VY     +     N  NL Y+F      + D++ +
Sbjct: 90  DMYEGCLVKHKNTLKLIRDTTILQLVYRNLVTLLKYKINTFNLSYWFFNNNPTFRDTELS 149

Query: 564 KLRRCYKKV 590
           KL    KKV
Sbjct: 150 KLIETLKKV 158


>Z50858-3|CAA90723.1|  131|Caenorhabditis elegans Hypothetical
           protein F44A6.3 protein.
          Length = 131

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +1

Query: 205 FTAEIGGAVVPTRADSQEVLPPVITQIIILRVSLLLHDVIPSPWKSIVNIC*VRISL 375
           F     G+++P+++ S E++PPV +   +  + L     IP+ W++  N   ++ SL
Sbjct: 12  FRVTFNGSLLPSQSQSGEIIPPVFSDSPLKTIVLEDAPSIPN-WRNKENSTLLKPSL 67


>L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical
           protein ZC21.3 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +3

Query: 108 YNANAPHTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGTYPCGLTRGPTTSNYAN 284
           Y    P T +Y+S + V +   P  SN+N +L    N +       G+    TT  Y N
Sbjct: 143 YYQRVPSTAQYNSVLGV-NAGFPQSSNQNQVLRDQSNNQGYMNNNQGMYNTQTTQGYGN 200


>AF067946-3|AAC17682.1|  288|Caenorhabditis elegans Hypothetical
           protein W02G9.4 protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 520 VIYITFLFITTANSQSYDGATKKLY 594
           VI ++FL +  A   ++DGAT KLY
Sbjct: 4   VILLSFLALCRAQHLNFDGATGKLY 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,030
Number of Sequences: 27780
Number of extensions: 322975
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)