Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0420
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38640.1 68417.m05469 choline transporter-related contains we...    28   6.1  
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria...    27   8.1  
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,...    27   8.1  
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria...    27   8.1  

>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 273 NYANYNFAGFTFITRCYS--FTVEVNREHLLSTYFIRKIGTRL 395
           N    NFA  T    C S   T E+ R +LLS  F+  + TR+
Sbjct: 413 NKFTINFAAITGEAYCTSAKMTYELLRRNLLSAVFVETVSTRI 455


>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
           identical to SP|P83484 ATP synthase beta chain 2,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; strong similarity to SP|P17614 ATP synthase
           beta chain, mitochondrial precursor (EC 3.6.3.14)
           {Nicotiana plumbaginifolia}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain; supporting cDNA
           gi|26452187|dbj|AK118582.1|
          Length = 556

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 214 EIGGAVVPTRADSQEVLPPVITQI 285
           ++ GA+V  R + QE LPP++T +
Sbjct: 88  QVIGAIVDVRFEDQEGLPPIMTSL 111


>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
           putative strong similarity to SP|P83483 ATP synthase
           beta chain 1, mitochondrial precursor (EC 3.6.3.14)
           {Arabidopsis thaliana}, SP|P17614 ATP synthase beta
           chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
           plumbaginifolia}; contains Pfam profiles PF00006: ATP
           synthase alpha/beta family nucleotide-binding domain,
           PF00306: ATP synthase ab C terminal, PF02874: ATP
           synthase alpha/beta family beta-barrel domain
          Length = 559

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 214 EIGGAVVPTRADSQEVLPPVITQI 285
           ++ GA+V  R + QE LPP++T +
Sbjct: 91  QVIGAIVDVRFEDQEGLPPIMTSL 114


>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
           identical to SP|P83483 ATP synthase beta chain 1,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; strong similarity to SP|P17614 ATP synthase
           beta chain, mitochondrial precursor (EC 3.6.3.14)
           {Nicotiana plumbaginifolia}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain; supporting cDNA
           gi|26452102|dbj|AK118538.1|
          Length = 556

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 214 EIGGAVVPTRADSQEVLPPVITQI 285
           ++ GA+V  R + QE LPP++T +
Sbjct: 88  QVIGAIVDVRFEDQEGLPPIMTSL 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,714,906
Number of Sequences: 28952
Number of extensions: 290431
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)