Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0417
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    27   1.8  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    27   2.4  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    27   3.1  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   4.2  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   9.6  

>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +2

Query: 194 SEIRQTQINWQSYLQSQMITQRDHDFIVNLYQR---GQKDLPDKNPDACAEVFLNLLTHI 364
           + +R   I WQ Y +S  + + +   I NL  +         +++  A + +FL LL+  
Sbjct: 29  NNVRCVAIPWQGYQRSGSLEENELQEIENLTGKPLSAYVKTAEEDTTAYSNLFLKLLSMK 88

Query: 365 SKDHTIQYILV-LIDDILSEDK 427
                + + LV L D +L+ +K
Sbjct: 89  DTPDVVNFALVKLADTLLNSNK 110


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 269 FIVNLYQRGQKDLPDKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDK 427
           +++ L+Q      P K   + AE+ ++   H+S D+T      L  DIL  D+
Sbjct: 205 YLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDILERDE 257


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 448 TKYLHPRFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIGIL 314
           +KY  P+F+F K  ++E + + +G+ +  M   V  + G  I +L
Sbjct: 46  SKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDML 90


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +2

Query: 158  MIAATSVLQIRASEIRQTQINWQSYLQSQMITQRDHDFIVNLYQRGQKDL 307
            ++  + VL   A     +Q +  SYLQ  +   +DH  +++ Y    K++
Sbjct: 1167 LVRPSYVLSGAAMNTVYSQSDLHSYLQQAVAINKDHPVVISKYIENAKEI 1216


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 50  EKLQYLCFFRKTAQ 9
           EKL+Y+C F KT++
Sbjct: 83  EKLEYICIFEKTSK 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,354
Number of Sequences: 5004
Number of extensions: 50903
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)