Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0417
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0822 + 21762662-21762767,21763295-21763347,21764639-217647... 60 2e-09
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888... 34 0.11
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 32 0.35
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 31 1.1
01_06_0726 + 31514480-31514932 29 3.3
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 29 3.3
08_02_0107 + 12494650-12495270,12507463-12508146,12508325-125084... 28 5.7
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 28 7.5
06_01_0045 + 420300-420530,422730-423006,423974-424014 28 7.5
01_06_0723 + 31501900-31502808,31502846-31503295 27 9.9
>07_03_0822 +
21762662-21762767,21763295-21763347,21764639-21764764,
21764960-21765062,21765146-21765222
Length = 154
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/107 (27%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Frame = +2
Query: 182 QIRASEIRQTQINWQSYLQSQMITQRDHDFIVNLYQRGQKD---LPDKNPDACAEVFLNL 352
++ ++ + I W+SY+ +++I+ + + + L D++ + VFLN+
Sbjct: 48 ELTTEQVLKRDIPWESYMANKLISGTCLQLLRRYDHKPESQRGPLLDEDGPSYVRVFLNI 107
Query: 353 LTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFSG-NVWQPFLN 490
L +ISK+ T++Y+L LID++L+ + R +F + SG +++ PFL+
Sbjct: 108 LRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSGEDIYDPFLS 154
>08_02_1125 +
24488073-24488244,24488358-24488398,24488621-24488889,
24489061-24489157,24489407-24489753,24489816-24490173,
24490319-24490894,24491374-24491649
Length = 711
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 191 ASEIRQTQ-INWQSYLQSQMITQRDHDFIVNLYQRGQKDLPDKNPDACAEVFLNLLTHI 364
A E++ + W + S ++ Q + F++N Y + Q+D D NP +L++L H+
Sbjct: 460 AIEVQNIEDFTWLNSSYSPVLKQLESQFMINYYFKTQQDKRDNNPKFQNPKYLSILNHL 518
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +2
Query: 317 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSE-DKSRVKIFRETKFSGNVWQPFL 487
N + +F+ ++ ++ S+DHTIQ +L+L +I+ + D + K+ E + Q
Sbjct: 47 NGETLPHLFITVVRYVLPSEDHTIQKLLLLYLEIVDKRDVASGKVLPEMIL---ICQNLR 103
Query: 488 NLLNRQDEFVQHMTARIIAKL 550
N L +E+++ +T R + +L
Sbjct: 104 NNLQHPNEYIRGVTLRFLCRL 124
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +2
Query: 317 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 490
N + +F+ ++ ++ S+DHTIQ +L+L +I+ + + + E + Q N
Sbjct: 47 NGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRGLPEMIL---ICQNLRN 103
Query: 491 LLNRQDEFVQHMTARIIAKLA 553
L+ +E+++ +T R + +L+
Sbjct: 104 NLHHPNEYIRGVTLRFLCRLS 124
>01_06_0726 + 31514480-31514932
Length = 150
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 529 CSHHCQASLLASAA*WTKVICTFISPGLKINSRPIT 636
C H LL A T+ IC+ SP +SRPIT
Sbjct: 71 CGHRAWRRLLRRLAQETRCICSSSSPSGAASSRPIT 106
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -3
Query: 454 RLTKYLHP-RFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIGILVRQIFLAALV*V 278
R+T+ L P IF+++V NE ++ A ++ EK G L Q+F+ ++ +
Sbjct: 301 RITRGLEPVSQIFKQHVTNEGTALVKQAEDAASNKKPEKKEIVG---LQEQVFVRKIIEL 357
Query: 277 HDKIVIALSD 248
HDK V ++D
Sbjct: 358 HDKYVAYVTD 367
>08_02_0107 +
12494650-12495270,12507463-12508146,12508325-12508472,
12508493-12508584,12508713-12509426
Length = 752
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 338 VFLNLLTHISKDHTIQYILVLIDDILSEDKS 430
+F+NL+ + ++ ++++V IDDIL +S
Sbjct: 125 IFMNLMNKVFMEYVDKFVVVFIDDILVYSQS 155
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 341 FLNLLTHISKDHTIQYILVLIDDILSEDKSR 433
F+NL+ + ++ ++++V IDDIL K++
Sbjct: 973 FMNLMNKVFMEYLDKFVVVFIDDILIYSKTK 1003
>06_01_0045 + 420300-420530,422730-423006,423974-424014
Length = 182
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 527 SCAGQIHPDGSANSGRAAKRCQRISSHEISSPS 429
S ++ P SAN GRA C R++ EIS S
Sbjct: 51 SATEEVRPHLSAN-GRATSNCSRLARREISGTS 82
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -2
Query: 623 ELIFKPGEIKVQITFVHQAADASKLAWQ*CEQSC 522
E + K G +++ F ++ADASKL W CE+SC
Sbjct: 364 EWVRKGGIGQLRRQFKIKSADASKLRWF-CEKSC 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,226,948
Number of Sequences: 37544
Number of extensions: 336006
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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