Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0417
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   1e-11
SB_40454| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_14470| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 65.3 bits (152), Expect(2) = 1e-11
 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
 Frame = +2

Query: 161 IAATSVLQIRASEIRQTQINWQSYLQSQMITQRDHDFIVNL-----YQRGQKDLPDKNPD 325
           + A S L   A E+R+  +NWQSY+  +MI+Q D+  I +       +R  K + D+  D
Sbjct: 31  VIAGSRLVADAVEVRKQTVNWQSYVHGKMISQEDYSMIADYDCMDPVERA-KIISDRG-D 88

Query: 326 ACAEVFLNLLTHISKDHTIQYILVLIDDILS 418
             A+  L+LL  +++DHTI+YILVLIDD+L+
Sbjct: 89  QLAKTCLSLLVKLTRDHTIRYILVLIDDMLN 119



 Score = 35.1 bits (77), Expect = 0.051
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +3

Query: 573 MDKSDLHFYLSWLKDQLKTNNNDYIQSV 656
           + +SDL+F+LSWLK+QL +   +Y+ S+
Sbjct: 135 LPESDLNFFLSWLKNQLTSPTCEYLHSI 162



 Score = 21.8 bits (44), Expect(2) = 1e-11
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 536 IIAKLACW 559
           I+AKLACW
Sbjct: 123 IVAKLACW 130


>SB_40454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 76  IYLAKMANVSEENVSQLIPTLGDDKN 153
           IY+  + NV+ E +SQL+P L  DK+
Sbjct: 1   IYIQDVYNVNREEISQLLPKLIQDKS 26


>SB_14470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -3

Query: 577 SIRLRMPAS*LGNDASSHVLDKFILTVQQIQEGLPNVAREFRLTKYLHPRFIFRKNVIN 401
           S R  +  S L  +++  +  +F+  V+  +E +P+ +REF+     H   IFR  VIN
Sbjct: 184 STRFTVNLSHLKTNSTDRLALEFVSVVKS-EESMPSCSREFQSIDDEHSPGIFRTVVIN 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,987,589
Number of Sequences: 59808
Number of extensions: 393831
Number of successful extensions: 964
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)