Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0417
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpa... 114 5e-26
U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical p... 82 4e-16
U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical pr... 31 0.95
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 29 2.2
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 29 2.2
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 29 2.2
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 29 2.2
Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical pr... 29 2.9
>U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpase
protein 15 protein.
Length = 470
Score = 114 bits (275), Expect = 5e-26
Identities = 59/144 (40%), Positives = 89/144 (61%), Gaps = 8/144 (5%)
Frame = +2
Query: 152 IDMIAATSVLQIRASEIRQTQINWQSYLQSQMITQRDHDFIV---NLYQRGQKD--LPDK 316
+DM+ ATS LQ+ A E+R + NW SY +SQMI + D++FI N + ++D L
Sbjct: 12 VDMLNATSRLQLEAQELRNNKPNWGSYFRSQMIQEDDYNFITSFENAKSKEERDQVLAAN 71
Query: 317 NPDA-CAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRE--TKFSGNVWQPFL 487
N + A+ NL+T ++KD ++Y+L L DD+L EDKSRV++F + VW +L
Sbjct: 72 NANGQAAKTMANLITQVAKDQNVRYVLTLFDDMLQEDKSRVELFHSAAARQKRTVWSQYL 131
Query: 488 NLLNRQDEFVQHMTARIIAKLACW 559
+L RQD F+ + + IIAKLAC+
Sbjct: 132 GILQRQDNFIVNQMSSIIAKLACF 155
>U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical
protein F52E1.10 protein.
Length = 451
Score = 81.8 bits (193), Expect = 4e-16
Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 7/131 (5%)
Frame = +2
Query: 182 QIRASEIRQTQINWQSYLQSQMITQRDHDFIVNLYQRGQKDLPDKN-----PDACAEVFL 346
Q A ++R + NW + +++MI Q D+DFIV YQ+ + + + F+
Sbjct: 15 QKEADKVRAMKTNWGLFTRTRMIAQSDYDFIVT-YQQAENEAERSTVLSVFKEKAVYAFV 73
Query: 347 NLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETK--FSGNVWQPFLNLLNRQDEFVQ 520
+L++ ISKD ++Y L LIDD+L ED +R IF + + + F+ LL+RQD+++
Sbjct: 74 HLMSQISKDDYVRYTLTLIDDMLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQDQYIV 133
Query: 521 HMTARIIAKLA 553
H+T I+ K+A
Sbjct: 134 HITFSILTKMA 144
>U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical
protein K04A8.5 protein.
Length = 411
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 469 VAREFRLTKYLHPRFIFRKNVINEHKNVLNGVVLAD 362
V FR+ Y H FI+ N ++ NV+ G++L D
Sbjct: 373 VQGSFRIENYNHLHFIWGTNAASQVYNVITGIILQD 408
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = -2
Query: 536 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 366
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 365 *YASGG*ERLRHRHRDSCQADLFG 294
G HR C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = -2
Query: 536 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 366
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 365 *YASGG*ERLRHRHRDSCQADLFG 294
G HR C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = -2
Query: 536 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 366
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 365 *YASGG*ERLRHRHRDSCQADLFG 294
G HR C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = -2
Query: 536 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 366
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 365 *YASGG*ERLRHRHRDSCQADLFG 294
G HR C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical protein
K12D12.2 protein.
Length = 1696
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 623 ELIFKPGEIKVQITFVHQAADASKLAWQ*CEQSC 522
EL KP +KV+ T H A+A L C+Q C
Sbjct: 1560 ELFLKPETVKVKGTSAHAYANALDLGLHFCKQMC 1593
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,004
Number of Sequences: 27780
Number of extensions: 295707
Number of successful extensions: 760
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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