Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0417
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   1.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   1.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.8  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 380 WCGPC*YASGG*ERLRHRHRDSC 312
           WCG    +SG  E  R +H D+C
Sbjct: 36  WCGHGNKSSGPNELGRFKHTDAC 58


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 380 WCGPC*YASGG*ERLRHRHRDSC 312
           WCG    +SG  E  R +H D+C
Sbjct: 41  WCGHGNKSSGPNELGRFKHTDAC 63


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 380 WCGPC*YASGG*ERLRHRHRDSC 312
           WCG    +SG  E  R +H D+C
Sbjct: 41  WCGHGNKSSGPNELGRFKHTDAC 63


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 467 NVWQPFLNLLNRQD 508
           N W+P  NL+N  D
Sbjct: 273 NTWEPISNLINCSD 286


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +2

Query: 257 RDHDFIVNLYQRGQKDLPDKNPDACAEV 340
           RDH  +       Q  +PD+   AC ++
Sbjct: 618 RDHKDVTQCISCRQGTVPDETHSACRDI 645


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,368
Number of Sequences: 438
Number of extensions: 3850
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)