Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0415
         (680 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54HF4 Cluster: Putative uncharacterized protein; n=2; ...    34   3.7  
UniRef50_Q54PE2 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  

>UniRef50_Q54HF4 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1677

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = -3

Query: 597 ISTDQLLRKSYLHLTYKRSLTLLFLA*SRHNHSNLNLR 484
           I ++ L RKS ++L Y+++LTL+ L    H++ N+ LR
Sbjct: 807 IPSENLSRKSSVNLIYQKTLTLMALIEFNHHYQNIELR 844


>UniRef50_Q54PE2 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 484

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -2

Query: 514 PT*SLQPESATTNLKKKKQHPL*RIKINNARLTSQTPSTNNYNNVNIIG 368
           PT    P S+ TNL      PL  + +NN    +   + NN NN N IG
Sbjct: 354 PTFDFSPSSSPTNLYPSSSSPLFNLNLNNLNNLNNLNNNNNSNN-NSIG 401


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,893,823
Number of Sequences: 1657284
Number of extensions: 9778434
Number of successful extensions: 20758
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20696
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)