BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0415 (680 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 23 3.6 DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 23 3.6 DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 23 3.6 DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 23 3.6 DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 23 3.6 DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 23 3.6 DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 23 3.6 DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 23 3.6 DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 23 3.6 AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 23 3.6 AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 3.6 DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 22 4.7 AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 4.7 DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 8.2 DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 8.2 DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 8.2 DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 8.2 AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 8.2 >DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex determiner protein. Length = 185 Score = 22.6 bits (46), Expect = 3.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 445 RIKINNARLTSQTPSTNNYNNVN 377 +I NN L++ NNYNN N Sbjct: 80 KIISNNNSLSNNYNYNNNYNNYN 102 >DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 22.6 bits (46), Expect = 3.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 445 RIKINNARLTSQTPSTNNYNNVN 377 +I NN L++ NNYNN N Sbjct: 80 KIISNNNSLSNNYNYNNNYNNYN 102 >DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 22.6 bits (46), Expect = 3.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 445 RIKINNARLTSQTPSTNNYNNVN 377 +I NN L++ NNYNN N Sbjct: 80 KIISNNNSLSNNYNYNNNYNNYN 102 >DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 22.6 bits (46), Expect = 3.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 445 RIKINNARLTSQTPSTNNYNNVN 377 +I NN L++ NNYNN N Sbjct: 80 KIISNNNSLSNNYNYNNNYNNYN 102 >DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 22.6 bits (46), Expect = 3.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 445 RIKINNARLTSQTPSTNNYNNVN 377 +I NN L++ NNYNN N Sbjct: 80 KIISNNNSLSNNYNYNNNYNNYN 102 >DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 22.6 bits (46), Expect = 3.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 445 RIKINNARLTSQTPSTNNYNNVN 377 +I NN L++ NNYNN N Sbjct: 80 KIISNNNSLSNNYNYNNNYNNYN 102 >DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 22.6 bits (46), Expect = 3.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 445 RIKINNARLTSQTPSTNNYNNVN 377 +I NN L++ NNYNN N Sbjct: 80 KIISNNNSLSNNYNYNNNYNNYN 102 >DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 22.6 bits (46), Expect = 3.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 445 RIKINNARLTSQTPSTNNYNNVN 377 +I NN L++ NNYNN N Sbjct: 80 KIISNNNSLSNNYNYNNNYNNYN 102 >DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 22.6 bits (46), Expect = 3.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 445 RIKINNARLTSQTPSTNNYNNVN 377 +I NN L++ NNYNN N Sbjct: 80 KIISNNNSLSNNYNYNNNYNNYN 102 >AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex determiner protein. Length = 414 Score = 22.6 bits (46), Expect = 3.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 445 RIKINNARLTSQTPSTNNYNNVN 377 +I NN L++ NNYNN N Sbjct: 313 KIISNNNSLSNNYNYNNNYNNYN 335 >AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex determiner protein. Length = 414 Score = 22.6 bits (46), Expect = 3.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 445 RIKINNARLTSQTPSTNNYNNVN 377 +I NN L++ NNYNN N Sbjct: 313 KIISNNNSLSNNYNYNNNYNNYN 335 >DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 22.2 bits (45), Expect = 4.7 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 445 RIKINNARLTSQTPSTNNYNNVN 377 +I NN L++ NNYNN N Sbjct: 80 KIISNNNPLSNNYNYNNNYNNYN 102 >AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex determiner protein. Length = 425 Score = 22.2 bits (45), Expect = 4.7 Identities = 10/35 (28%), Positives = 17/35 (48%) Frame = -2 Query: 481 TNLKKKKQHPL*RIKINNARLTSQTPSTNNYNNVN 377 T ++ K+ + NN + ++ NNYNN N Sbjct: 304 TERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYN 338 >DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride channel variant 4 protein. Length = 489 Score = 21.4 bits (43), Expect = 8.2 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +1 Query: 595 NGLKVCWIYIISLVFFFFNYV 657 +G+ +C+IY L F NYV Sbjct: 367 DGVCMCFIYASLLEFVCVNYV 387 >DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride channel variant 3 protein. Length = 475 Score = 21.4 bits (43), Expect = 8.2 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +1 Query: 595 NGLKVCWIYIISLVFFFFNYV 657 +G+ +C+IY L F NYV Sbjct: 336 DGVCMCFIYASLLEFVCVNYV 356 >DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride channel variant 1 protein. Length = 509 Score = 21.4 bits (43), Expect = 8.2 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +1 Query: 595 NGLKVCWIYIISLVFFFFNYV 657 +G+ +C+IY L F NYV Sbjct: 387 DGVCMCFIYASLLEFVCVNYV 407 >DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride channel protein. Length = 458 Score = 21.4 bits (43), Expect = 8.2 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +1 Query: 595 NGLKVCWIYIISLVFFFFNYV 657 +G+ +C+IY L F NYV Sbjct: 336 DGVCMCFIYASLLEFVCVNYV 356 >AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor protein. Length = 587 Score = 21.4 bits (43), Expect = 8.2 Identities = 9/25 (36%), Positives = 13/25 (52%) Frame = +3 Query: 543 TFYTSNVSMICEAADPLKWLKSMLD 617 +F S S+ C AA L+W + D Sbjct: 13 SFRESRCSVRCSAASGLRWFEIWRD 37 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 166,116 Number of Sequences: 438 Number of extensions: 3153 Number of successful extensions: 22 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 22 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 20708550 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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