Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0415
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53910.1 68414.m06137 AP2 domain-containing protein RAP2.12 (...    30   1.2  
At5g64220.1 68418.m08067 calmodulin-binding protein similar to a...    29   2.8  
At1g73310.1 68414.m08484 serine carboxypeptidase S10 family prot...    29   3.8  
At2g07722.1 68415.m00971 hypothetical protein                          27   8.7  

>At1g53910.1 68414.m06137 AP2 domain-containing protein RAP2.12
           (RAP2.12) identical to AP2 domain containing protein
           GI:2281649 from [Arabidopsis thaliana]
          Length = 358

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 477 FVVADSGWSDYVGIKPRTGVSMTFYTSNVSMICEAADPLKWLKSM 611
           F  ++ GWSD   I P    S     +N ++  E A+P K LKSM
Sbjct: 266 FDCSEFGWSDQAPITPDIS-SAVINNNNSALFFEEANPAKKLKSM 309


>At5g64220.1 68418.m08067 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from[Nicotiana tabacum]
          Length = 1050

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +3

Query: 264 RSNSFQLPFTLNEALYI*RL 323
           +S+SFQ PFT NEA YI +L
Sbjct: 358 QSSSFQAPFTNNEAAYIPKL 377


>At1g73310.1 68414.m08484 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P07519) [Hordeum vulgare]; glucose acyltransferase
           GB:AAD01263 [Solanum berthaultii]; contains Pfam
           profile: PF00450 Serine carboxypeptidase
          Length = 441

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 97  AHEVVSFSSRLMVALALT--SSPLSFHHHSISFDKFLRKYTTLHIKLCSRY*YNIDCLEV 270
           AH++   S  L  +L  T     ++ H H     KF+ ++  L  ++C R+  +  C   
Sbjct: 234 AHKMALISDELYESLKRTCRGEYVNVHPHDTECLKFVEEFNKLTNRVCERHILHSCCETE 293

Query: 271 TP--FSYR 288
           TP  +SYR
Sbjct: 294 TPSCYSYR 301


>At2g07722.1 68415.m00971 hypothetical protein
          Length = 139

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 393 LFVDGVCDVR-RALFILMRQSGCCFFFFKFVVADSGWSDYVGIKPRTGVSMTFY 551
           LF++G+   R +A+   + Q G  FF  K  V  SG S      PR+     FY
Sbjct: 85  LFLNGIIATRGKAMLPTLPQKGAAFFPPKMPVPPSGPSKQHNSAPRSDFVQFFY 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,066,555
Number of Sequences: 28952
Number of extensions: 214032
Number of successful extensions: 401
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)