Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0413
         (655 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5BM32 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_Q4YRK7 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  

>UniRef50_A5BM32 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 1262

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 386 KCIWRRKLSFRMLSSWYCRNLRRCRSSICK*ATER 490
           K +W   +S+R + S  C NL RC  +I K  T+R
Sbjct: 128 KALWDEYISYRPIPSCRCGNLNRCSCNILKDLTDR 162


>UniRef50_Q4YRK7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 237

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 279 VTKLTNVSTYKSDAGVETIKLELQENLISWISN 181
           V K+ N +TY+ ++ +E  K +L+ N+I  + N
Sbjct: 96  VNKINNTNTYEDNSSIERTKFDLENNIIKTVDN 128


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,777,801
Number of Sequences: 1657284
Number of extensions: 11794599
Number of successful extensions: 22401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22398
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)