Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0413
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.54 
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    23   1.7  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   1.7  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   1.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.9  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.9  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.9  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   3.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   5.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.1  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   5.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.7  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   8.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 650 VQDLTSPGTTFTGRDKNRQ 594
           V DL+ PG ++TG  K+R+
Sbjct: 400 VLDLSKPGCSYTGEQKSRR 418


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 75  SKVFGDDDIEVNEVKKTDK 19
           SKVFG+D+  + ++ K++K
Sbjct: 100 SKVFGNDEKALEQIAKSEK 118


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 75  SKVFGDDDIEVNEVKKTDK 19
           SKVFG+D+  + ++ K++K
Sbjct: 160 SKVFGNDEKALEQIAKSEK 178


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 75  SKVFGDDDIEVNEVKKTDK 19
           SKVFG+D+  + ++ K++K
Sbjct: 160 SKVFGNDEKALEQIAKSEK 178


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 398 RRKLSFRMLSSWYCRNLRRCRSSICK*ATERVE*ARPDRH 517
           R KL+   +  W+     R R  I   AT  V    P+R+
Sbjct: 256 RTKLTEARIQVWFSNRRARLRKQITSAATPLVRSYAPERY 295


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 421 HSEA*LPPPNALHPYYLWVEIK 356
           H+ + +P P  + P Y W+++K
Sbjct: 182 HNLSSVPQPQPVLPTYKWMQVK 203


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 421 HSEA*LPPPNALHPYYLWVEIK 356
           H+ + +P P  + P Y W+++K
Sbjct: 182 HNLSSVPQPQPVLPTYKWMQVK 203


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 421 HSEA*LPPPNALHPYYLWVEIK 356
           H+ + +P P  + P Y W+++K
Sbjct: 182 HNLSSVPQPQPVLPTYKWMQVK 203


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 267  TNVSTYKSDAGVETIKLELQENLISWISNGV 175
            T  +TYK D  +  + + L   +I+W   GV
Sbjct: 1315 TFTTTYKEDVTLPCLAVGLPPPVITWKIKGV 1345


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 367 PINNMGEVHLAEEVKLPNV 423
           P+N + EV L +EV+ PN+
Sbjct: 575 PLNAIVEVVLVDEVQSPNL 593


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 367 PINNMGEVHLAEEVKLPNV 423
           P+N + E+ L +EV+ PN+
Sbjct: 575 PLNAIVEIVLVDEVQQPNL 593


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 536 YLYRNGGAGPVELIQLS 486
           Y Y NG AGP+ +   S
Sbjct: 94  YSYANGAAGPIPVSMAS 110


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
          oxygenase protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 72 KVFGDDDIEVNEVKKTDK 19
          KVFG+D+  + ++ K++K
Sbjct: 1  KVFGNDEKALEQIAKSEK 18


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 496  ISSTGPAPPLR*RYYCRLDAVIVYHLKWPELLVCL 600
            IS  GP  P    ++C     I+  L  P+   CL
Sbjct: 968  ISQDGPLAPSSLFFFCMAAEFIIAALLHPQEFNCL 1002


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 496  ISSTGPAPPLR*RYYCRLDAVIVYHLKWPELLVCL 600
            IS  GP  P    ++C     I+  L  P+   CL
Sbjct: 968  ISQDGPLAPSSLFFFCMAAEFIIAALLHPQEFNCL 1002


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 238 RSGNY*TRITRKPYFVDF 185
           RS  Y TR+  +PY   +
Sbjct: 375 RSNKYPTRVPHRPYVAQY 392


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,889
Number of Sequences: 336
Number of extensions: 3101
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)