Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0413
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   1.8  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   7.2  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   7.2  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   9.5  

>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 383 VKCIWRRKLSFRMLSSWYCRNLRRCRSSIC 472
           VKCI    LS  +LS  + RNL R   S C
Sbjct: 362 VKCICLTDLSVILLSGSFSRNLERVHLSYC 391


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 188 IHEIRFSCNSSLIVSTPASDLYVLTLVSFV 277
           I E+ FS  +S IVS  A D+Y+  + SFV
Sbjct: 220 IDELDFSVLNS-IVSLDAKDIYIRVICSFV 248


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 477 ERRRELNKLDRTGTSVTIKILLPVGCGDS 563
           +RRR+L K+ + G  V  + LL +GCGD+
Sbjct: 13  QRRRKLFKILQGGFPV--RSLLDIGCGDA 39


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 288  QVIFNPVSINQFVLDNAVI 344
            + +  PV ++++VLDNA+I
Sbjct: 1028 ETVEGPVKLSEYVLDNAII 1046


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,435
Number of Sequences: 5004
Number of extensions: 51991
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)