Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0413
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0194 - 27368563-27370956                                         30   1.9  
03_04_0214 + 18688480-18688832,18688956-18688999,18689039-186891...    29   3.2  
05_01_0495 - 4136871-4136906,4137043-4137171,4137545-4137694,413...    28   7.5  
03_02_0703 - 10535082-10536779                                         27   9.9  

>01_06_0194 - 27368563-27370956
          Length = 797

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 32/94 (34%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
 Frame = -3

Query: 641 LTSPGTTFTGRDKNRQTNNSGHLRWYTITAS-----NRQ*YLYRNGGAGPVELIQLSPSL 477
           L SP TTF+       TN      WYT T           Y   NGG  PV L     SL
Sbjct: 43  LLSPDTTFSCGFHQLGTNAFTFSIWYTHTTEKTAVWTANPYSPANGGYSPVNLYGSRVSL 102

Query: 476 ICISNFCIVSDYDNTKMTTFGSLTSSAKCTSPIL 375
               N  +++D + T  T + S TSS K T+  L
Sbjct: 103 GHDGNL-VLTDTNGT--TVWESKTSSGKHTTVTL 133


>03_04_0214 +
           18688480-18688832,18688956-18688999,18689039-18689101,
           18689883-18689956,18691526-18692017
          Length = 341

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 598 DRPTIPAI*DGILSPHPTGSNIFIVTEVPV 509
           DRP +P I    +S +PT   + I++EVP+
Sbjct: 200 DRPLVPTIKTFQISTNPTTEGLGIISEVPI 229


>05_01_0495 -
           4136871-4136906,4137043-4137171,4137545-4137694,
           4137782-4137847,4138124-4138168,4139022-4139102,
           4139202-4139283,4139571-4139642,4140473-4140573,
           4140690-4140806,4140929-4141249
          Length = 399

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -3

Query: 626 TTFTGRDKNRQTNNSGHLRWYTITASNRQ*YLYRNGGAGPV--ELIQLSPSLICISNFCI 453
           TT +G   NRQ NNS  + W   +    +  L  +    P+    + +S S + + NF  
Sbjct: 130 TTRSGFFYNRQVNNSVQVDWGEASMIEAERVLLAHALKDPLNERFVFVSDSCVPLYNFNY 189

Query: 452 VSDYDNTKMTTF 417
             DY  +  T+F
Sbjct: 190 TYDYIMSSSTSF 201


>03_02_0703 - 10535082-10536779
          Length = 565

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 530 YRNGGAGPVELIQLSPSLICISNFCIVSDYDNTKMTTFGSLTSSA 396
           ++NG +   E  +LS S+  I +FC   DY  T  TT      +A
Sbjct: 26  FKNGSSNAKEDGELSTSVKSIKSFCQPVDYRETCETTLEQTAGNA 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,379,136
Number of Sequences: 37544
Number of extensions: 311370
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)