Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0413
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical p...    28   6.7  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    28   6.7  

>Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical
           protein C01G10.17 protein.
          Length = 75

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 602 NRQTNNSGHLRWYTITASNRQ*YLYRNGGAG 510
           N   NN+G+  +Y    +N   Y Y NG +G
Sbjct: 29  NNYNNNNGYTTYYYYPNNNNNGYYYNNGCSG 59


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 115 MTWHSEC*SVIR*SFLIDLTYTV*NPRNKVF 207
           +TW SE  S+I   F ID+ YT   P NK++
Sbjct: 36  ITWKSEF-SLIYTRFAIDIVYTFFVPHNKIY 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,592,631
Number of Sequences: 27780
Number of extensions: 290344
Number of successful extensions: 549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)