Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0411
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       175   3e-44
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       175   3e-44
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                       123   1e-28
SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  175 bits (425), Expect = 3e-44
 Identities = 83/162 (51%), Positives = 109/162 (67%), Gaps = 2/162 (1%)
 Frame = +1

Query: 70  RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 249
           R+L++G ++E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD
Sbjct: 61  RYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSD 120

Query: 250 FNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGV 423
           + +  +EFDSY++P+ ++   +FRLL+VD               TA DVIHS  +P+L V
Sbjct: 121 YQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAV 180

Query: 424 KVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIE 549
           K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVIE
Sbjct: 181 KMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIE 222


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  175 bits (425), Expect = 3e-44
 Identities = 83/162 (51%), Positives = 109/162 (67%), Gaps = 2/162 (1%)
 Frame = +1

Query: 70  RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 249
           R+L++G ++E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD
Sbjct: 61  RYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSD 120

Query: 250 FNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGV 423
           + +  +EFDSY++P+ ++   +FRLL+VD               TA DVIHS  +P+L V
Sbjct: 121 YQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAV 180

Query: 424 KVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIE 549
           K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVIE
Sbjct: 181 KMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIE 222


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score =  123 bits (297), Expect = 1e-28
 Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 2/142 (1%)
 Frame = +1

Query: 70  RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 249
           R+L++G ++E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD
Sbjct: 61  RYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSD 120

Query: 250 FNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGV 423
           + +  +EFDSY++P+ ++   +FRLL+VD               TA DVIHS  +P+L V
Sbjct: 121 YQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAV 180

Query: 424 KVDANPGRLNQTNFFINRPGIF 489
           K+DA PGRLNQT FFI +   F
Sbjct: 181 KMDAVPGRLNQTGFFIKKTWSF 202


>SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 337 YDYLHLIVGIHYFLFHWMGLYMSQIQYY*NLNIHIFS 227
           YD +H    IHY   H+  ++   IQYY   NIH ++
Sbjct: 31  YDNIHYD-NIHYDNIHYDNIHYDNIQYY---NIHYYN 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,670,601
Number of Sequences: 59808
Number of extensions: 190087
Number of successful extensions: 315
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)