Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0411
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.5  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 179 SSNKYNNRNDGKAMKINV 126
           ++N YNN N  K +  N+
Sbjct: 99  NNNNYNNNNYNKKLYYNI 116


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 179 SSNKYNNRNDGKAMKINV 126
           ++N YNN N  K +  N+
Sbjct: 99  NNNNYNNNNYNKKLYYNI 116


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 582 NSINKVFD*NTFNYNRYKTMISSTNF 505
           N+ N  ++ N  NYN YK +  + N+
Sbjct: 99  NNYNN-YNYNNNNYNNYKKLYYNINY 123


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 215 PIDFSVISGLLSSSNKYNNRNDGKAMKINV 126
           P   S +S   + SN Y N N+ K +  N+
Sbjct: 301 PKIISSLSNSCNYSNNYYNNNNYKKLYYNI 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,785
Number of Sequences: 438
Number of extensions: 2267
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)