Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0410
         (632 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    39   0.11 
UniRef50_Q8XZA8 Cluster: Putative uncharacterized protein; n=1; ...    36   0.81 
UniRef50_Q2J563 Cluster: Putative uncharacterized protein; n=1; ...    35   1.9  
UniRef50_Q4Z5P4 Cluster: Putative uncharacterized protein; n=1; ...    35   1.9  
UniRef50_Q09F14 Cluster: Heme maturase; n=1; Tetrahymena pigment...    34   3.3  
UniRef50_A4L217 Cluster: Putative uncharacterized protein; n=1; ...    33   4.3  
UniRef50_Q4XTV2 Cluster: Putative uncharacterized protein; n=1; ...    33   7.5  
UniRef50_Q0FKJ8 Cluster: Putative uncharacterized protein; n=3; ...    32   10.0 
UniRef50_A7KGZ9 Cluster: NapH1; n=6; Streptomyces|Rep: NapH1 - S...    32   10.0 

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 38.7 bits (86), Expect = 0.11
 Identities = 17/24 (70%), Positives = 18/24 (75%)
 Frame = +1

Query: 316 HGHSPLSFSPDLLSGSRFRPGGRF 387
           H   PLSFSPDLLSGSRFR G  +
Sbjct: 392 HRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_Q8XZA8 Cluster: Putative uncharacterized protein; n=1;
           Ralstonia solanacearum|Rep: Putative uncharacterized
           protein - Ralstonia solanacearum (Pseudomonas
           solanacearum)
          Length = 401

 Score = 35.9 bits (79), Expect = 0.81
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 250 RPINLKTPTRSNSSITTKSELFHGHSPLSFSPDLLS 357
           RP  ++ P R N +I   S+LFHG   + F PD LS
Sbjct: 321 RPRAIRIPYRQNRAILFNSDLFHGTEAVCFRPDYLS 356


>UniRef50_Q2J563 Cluster: Putative uncharacterized protein; n=1;
           Frankia sp. CcI3|Rep: Putative uncharacterized protein -
           Frankia sp. (strain CcI3)
          Length = 445

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 285 FFDYDKERIIPWTQPTEFLAGSSQWVAIPTRW*ILQNTALARASVRNFPELEPVSS 452
           F +Y ++  + WT  T+ LAG+  WV     W     +   +A  R FP L PV S
Sbjct: 120 FTEYREDLELEWTSGTDLLAGTPVWVPAQLVW----VSYAHQAQARGFPYLSPVLS 171


>UniRef50_Q4Z5P4 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 51

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = +3

Query: 30  IAVLSSFIILIYLMLLDSFKVVKSIYF*VAFIYLGIFIRRYSIVGL 167
           I VLS F +  YL+++  F +V +++F   +IY+ I++  Y I+ L
Sbjct: 6   IFVLSHFPLFFYLIIIIYFLIVDTVFFEYIYIYVCIYLFTYVIIFL 51


>UniRef50_Q09F14 Cluster: Heme maturase; n=1; Tetrahymena
           pigmentosa|Rep: Heme maturase - Tetrahymena pigmentosa
          Length = 522

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 21/72 (29%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +3

Query: 15  KRKKNIAVLSS-FIILIYLMLLDSFKVVKSIYF*VAFIYLGIFIRRYSIVGL*VHVARYI 191
           K+  NI ++S  FIIL+Y++++  + +V+SI+  +    L  +++ Y I  + ++ + Y+
Sbjct: 227 KKIFNIKLVSYLFIILLYIIIV-RYNLVQSIHNFIIINNLNQYLK-YLIYVIIIYTSIYL 284

Query: 192 YLSKFVCNEIYY 227
           Y + +  N+IYY
Sbjct: 285 YANLYKYNKIYY 296


>UniRef50_A4L217 Cluster: Putative uncharacterized protein; n=1;
           Gryllus bimaculatus nudivirus|Rep: Putative
           uncharacterized protein - Gryllus bimaculatus nudivirus
          Length = 120

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 20/71 (28%), Positives = 38/71 (53%)
 Frame = +3

Query: 24  KNIAVLSSFIILIYLMLLDSFKVVKSIYF*VAFIYLGIFIRRYSIVGL*VHVARYIYLSK 203
           K   +   +I LI L +L S  V+ +I +   +IY+ I+I  Y  + + +++  YIY+  
Sbjct: 36  KKYCIKKIYITLILLKILVS--VLNAILYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYI 93

Query: 204 FVCNEIYYVIF 236
           ++   IY  I+
Sbjct: 94  YIYIYIYIYIY 104


>UniRef50_Q4XTV2 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 81

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +3

Query: 24  KNIAVLSSFIILIYLMLLDSFKVVKSIYF*VAFIYLGIFIRRYSIVGL*VHVARYIYLSK 203
           K  A+   F+I  ++    S K +  I+F    +Y  I  R++ + G  +HV  + +  K
Sbjct: 19  KIYAIYIYFLIFNFIFFSSSHKSL--IFFSPIQLYYDILRRKFIVYGCNIHVCNFFFFCK 76

Query: 204 FVC 212
           ++C
Sbjct: 77  YIC 79


>UniRef50_Q0FKJ8 Cluster: Putative uncharacterized protein; n=3;
           Rhodobacteraceae|Rep: Putative uncharacterized protein -
           Roseovarius sp. HTCC2601
          Length = 577

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 550 TRLMNLKFYCTPVVFIPYLFAGIGYYR 470
           +R  N++F  TP+V  PY+FAGIG  R
Sbjct: 489 SRPTNVQFQNTPLVVSPYIFAGIGAVR 515


>UniRef50_A7KGZ9 Cluster: NapH1; n=6; Streptomyces|Rep: NapH1 -
           Streptomyces aculeolatus
          Length = 528

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 288 FDYDKERIIPWTQPTEFLAGSSQWVAI 368
           FD DK+  I W QPT+  AG S  +AI
Sbjct: 56  FDLDKDNYIKWAQPTDENAGQSPTLAI 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,116,796
Number of Sequences: 1657284
Number of extensions: 10511343
Number of successful extensions: 25896
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25833
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)