Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0410
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   2.3  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   3.0  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    27   3.0  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    25   9.1  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 15  KRKKNIAVLSSFIILIYLMLLDSFKVVKSIYF*VAFIYLGIFIRRYSI 158
           ++ K + V    I+L +   L S KVV S+    A I LG++  RY +
Sbjct: 755 EQDKLVPVNGRLILLEFEKELQSLKVVSSMVLSAAVIDLGVYNDRYIV 802


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 48  FIILIYLMLLDSFKVVKSIYF*-VAFIYLGIFIRRYSIV 161
           F+I   L+LL  F+   S+++  V +I LG+FIR + +V
Sbjct: 171 FVINHILILLGYFQCSYSVFYASVFYILLGVFIRVFYLV 209


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 93  VKSIYF*VAFIYLGIFIRRYSIVGL*VHVARYIYLSKFVCNEIYYVIFA 239
           V S+   + F +L I I + S+      +  Y+YL  F+ N ++ V+FA
Sbjct: 68  VSSVLMLILFSWLAIHIPKSSVPH--ALILFYVYLIDFLLNVLFTVLFA 114


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 208 YVTKSITLFLPT*KRPINLKTPTRSNSSITTKSELFHGHS 327
           Y+ K I ++    +RP  LK     N +   +S+L H HS
Sbjct: 16  YINKDIEIWASLDERPCALKPRNIENFNNQERSDLEHIHS 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,666
Number of Sequences: 5004
Number of extensions: 47577
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)