Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0410
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570 34 0.11
01_06_0389 - 28932228-28932365,28932967-28934184 30 1.8
06_01_0585 - 4200230-4201282 29 4.1
04_03_1041 - 21938347-21938529,21938618-21938773,21939291-219394... 29 4.1
05_07_0290 + 29016410-29018920 28 5.4
03_03_0248 + 15819264-15819460,15820691-15820729,15820797-158209... 28 5.4
10_01_0159 - 1807806-1809386 28 7.1
08_02_0024 - 11354491-11354915,11355747-11355894 27 9.4
05_07_0188 - 28269657-28270034,28270113-28270253,28270334-282705... 27 9.4
01_06_0390 - 28938485-28938751,28939924-28941282 27 9.4
>04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570
Length = 440
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = -1
Query: 614 TALFSNKT*NLNMYLLKKVKRNTPNEFKILLHSCCFYSLPIR 489
T L S N Y+LK V RN PN + LH C F P R
Sbjct: 348 TLLLSECDVGANCYVLKSVLRNAPNLEHLRLHRCKFLGTPKR 389
>01_06_0389 - 28932228-28932365,28932967-28934184
Length = 451
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 482 RLLQIRAGG*GAHGLKLREISNTSPSESSVLQNLPPGRNRDPLRRSGEKLSGLC 321
+L ++R G GA G + S+ E +++ G LRR G LSGLC
Sbjct: 4 QLRRVRTLGRGASGAVVWLASDDDSGELMAVKSASAGGAAAQLRREGRVLSGLC 57
>06_01_0585 - 4200230-4201282
Length = 350
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 584 LNMYLLKKVKRNTPNEFKILLHSCCFYS 501
L+MYL KK + PNE ++ +CC S
Sbjct: 100 LSMYLAKKPDKADPNEARLSRFTCCALS 127
>04_03_1041 -
21938347-21938529,21938618-21938773,21939291-21939408,
21939536-21940203,21941773-21941802
Length = 384
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 620 VHTALFSNKT*NLNMYLLKKVKRNTPNEFKILLHSCCFYSLPIRWNRLLQ 471
+ T L + N LL+ + +N+PN K+ +H C F + W + Q
Sbjct: 288 LRTLLLDRCRPSYNNELLRHLLQNSPNLEKLTVHCCKFSKGSLEWRKSSQ 337
>05_07_0290 + 29016410-29018920
Length = 836
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 345 GSSQWVAIPTRW*ILQNTALARASVRNFPELEPVSS 452
G+S W A+ T I N ALA + RN LEP +S
Sbjct: 631 GASHWGALLTGCSIHGNLALAEVAARNLFILEPYNS 666
>03_03_0248 +
15819264-15819460,15820691-15820729,15820797-15820936,
15821150-15821225,15822866-15823160,15823236-15823342,
15823442-15823489,15823568-15823853,15823954-15823961,
15824083-15824184,15824426-15824553,15824664-15824741,
15825047-15825145,15825247-15825302
Length = 552
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 362 DPLRRSGEKLSGLCPWNNSLFVVIEEFD 279
D L ++ E GL PWN V+I+ FD
Sbjct: 54 DALYQATEDQQGLIPWNGKQDVLIDRFD 81
>10_01_0159 - 1807806-1809386
Length = 526
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -1
Query: 488 WNRLLQIRAGG*GAHGLKLREISNTSPSESSVLQNLPPGRNRDPLRRSGEKLSGL 324
W RL R+ G GA G + +N E V+++ G R LRR +SGL
Sbjct: 11 WTRL---RSVGRGASGAVVSLAANDVSGELFVIKSAGEGAARQQLRREWSVMSGL 62
>08_02_0024 - 11354491-11354915,11355747-11355894
Length = 190
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 318 WTQPTEFLAGSSQW-VAIPTRW*ILQNTALARASVRNFPELEPVSSL 455
WTQ + AG S W A +W + Q+T+ + N + P+S +
Sbjct: 66 WTQVPHYSAGGSTWQSAGEHQWQVPQDTSHENSHSSNTSGMPPISKM 112
>05_07_0188 -
28269657-28270034,28270113-28270253,28270334-28270570,
28270733-28271179,28273978-28274274
Length = 499
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -2
Query: 199 LKYIYLATCTYKPTIL-YLRI 140
L+YIYLA+C + PT L YL +
Sbjct: 235 LRYIYLASCNFHPTRLSYLDV 255
>01_06_0390 - 28938485-28938751,28939924-28941282
Length = 541
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 482 RLLQIRAGG*GAHGLKLREISNTSPSESSVLQNLPPGRNRDPLRRSGEKLSGLC 321
+L ++R G GA G + S+ + E +++ + LRR G +SGLC
Sbjct: 10 QLRRLRTLGRGASGAVVWLASDDASGELLAVKSAAGEGGAEQLRREGRVMSGLC 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,738,823
Number of Sequences: 37544
Number of extensions: 260280
Number of successful extensions: 602
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -