Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0410
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42253| Best HMM Match : Usp (HMM E-Value=0.00023)                   29   4.1  
SB_20051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)             28   7.2  

>SB_42253| Best HMM Match : Usp (HMM E-Value=0.00023)
          Length = 421

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 396 CFAKSTTGSESRPTEKIRRETQWAVSME*FALCRNR---RIRSSRCF 265
           C  K    + +RPT+  R   + AVS+  +A  RN+   R+ S RCF
Sbjct: 225 CNLKQALHATTRPTDHKRHRQRKAVSVASYAPLRNKNQTRMASLRCF 271


>SB_20051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 614 TALFSNKT*NLNMYLLKKVK-RNTPNEF 534
           T   +NK  N+ +YLL+KVK RN  N F
Sbjct: 30  TCFAANKAVNMRLYLLQKVKLRNACNRF 57


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 547 RLMNLKFYCTPVV-FIPYLFAGIGYYRYARAGRELTGSSSGK 425
           R  N+KF+ + V  F  Y+FA +G  RY    R+   S+  K
Sbjct: 83  RAKNIKFFASDVFGFYGYMFADLGKDRYVEEERKTIHSAEKK 124


>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
          Length = 492

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 84  FKVVKSIYF*VAFIYLGIFIRR-YSIV-GL*VHVARYIYLSKFVCNEIYYVIF 236
           F+ V  +YF   F ++ +  R  Y +   +     RY+Y   FVCN +++ +F
Sbjct: 14  FRYVYPVYF-TLFTFVSLCFRYVYPVFFAMITRCFRYVYPVFFVCNPVFFAMF 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,613,425
Number of Sequences: 59808
Number of extensions: 321331
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)