Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0410
         (632 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069388-1|AAL39533.1|  415|Drosophila melanogaster LD09732p pro...    30   3.0  
AJ009657-1|CAA08768.1|  415|Drosophila melanogaster Mu3 subunit ...    30   3.0  
AF110233-1|AAF14249.1|  415|Drosophila melanogaster clathrin-ass...    30   3.0  
AE014298-989|AAF46231.1|  415|Drosophila melanogaster CG3035-PA ...    30   3.0  
BT001365-1|AAN71120.1|  844|Drosophila melanogaster AT30147p pro...    29   6.9  
AY113590-1|AAM29595.1|  705|Drosophila melanogaster RH41322p pro...    29   6.9  
AE014297-1809|AAN13596.1|  844|Drosophila melanogaster CG31533-P...    29   6.9  
AE013599-3538|AAF46952.3|  705|Drosophila melanogaster CG9882-PA...    29   6.9  

>AY069388-1|AAL39533.1|  415|Drosophila melanogaster LD09732p
           protein.
          Length = 415

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 434 LREISNTSPSESSVLQNLPPGR-NRDPLRRSGEKLSGLCPWNNSLFVVIEEFDRV 273
           LR I+NT   +S+V   LP G+ +    RRSG + +     N + F VIEE D +
Sbjct: 138 LRTIANTVTGKSNVSTTLPSGQLSAVRWRRSGVRYTN----NEAYFDVIEEVDAI 188


>AJ009657-1|CAA08768.1|  415|Drosophila melanogaster Mu3 subunit of
           clathrin-associatedprotein complex AP-3 protein.
          Length = 415

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 434 LREISNTSPSESSVLQNLPPGR-NRDPLRRSGEKLSGLCPWNNSLFVVIEEFDRV 273
           LR I+NT   +S+V   LP G+ +    RRSG + +     N + F VIEE D +
Sbjct: 138 LRTIANTVTGKSNVSTTLPSGQLSAVRWRRSGVRYTN----NEAYFDVIEEVDAI 188


>AF110233-1|AAF14249.1|  415|Drosophila melanogaster
           clathrin-associated adaptor complexAP-3 medium chain
           protein.
          Length = 415

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 434 LREISNTSPSESSVLQNLPPGR-NRDPLRRSGEKLSGLCPWNNSLFVVIEEFDRV 273
           LR I+NT   +S+V   LP G+ +    RRSG + +     N + F VIEE D +
Sbjct: 138 LRTIANTVTGKSNVSTTLPSGQLSAVRWRRSGVRYTN----NEAYFDVIEEVDAI 188


>AE014298-989|AAF46231.1|  415|Drosophila melanogaster CG3035-PA
           protein.
          Length = 415

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 434 LREISNTSPSESSVLQNLPPGR-NRDPLRRSGEKLSGLCPWNNSLFVVIEEFDRV 273
           LR I+NT   +S+V   LP G+ +    RRSG + +     N + F VIEE D +
Sbjct: 138 LRTIANTVTGKSNVSTTLPSGQLSAVRWRRSGVRYTN----NEAYFDVIEEVDAI 188


>BT001365-1|AAN71120.1|  844|Drosophila melanogaster AT30147p
           protein.
          Length = 844

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 271 PTRSNSSITTKSELFHGHSPLSFSPDLLSGSRFRP 375
           P +S   ++ +S+L HG  P+ F P  L    + P
Sbjct: 299 PVKSGIPVSVRSDLLHGVKPIRFCPVCLCSMSWMP 333


>AY113590-1|AAM29595.1|  705|Drosophila melanogaster RH41322p
           protein.
          Length = 705

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -1

Query: 572 LLKKVKRNTPNEFKILLHSCCFYSLPIRWNRLLQIRAGG*GAHGLKLR 429
           LL K+K   P   KI   S   Y+LP+ +  L +IRA      G  LR
Sbjct: 516 LLTKIKDRLPEGVKISPCSARIYALPVEFLDLHKIRAPVGSCEGFDLR 563


>AE014297-1809|AAN13596.1|  844|Drosophila melanogaster CG31533-PA
           protein.
          Length = 844

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 271 PTRSNSSITTKSELFHGHSPLSFSPDLLSGSRFRP 375
           P +S   ++ +S+L HG  P+ F P  L    + P
Sbjct: 299 PVKSGIPVSVRSDLLHGVKPIRFCPVCLCSMSWMP 333


>AE013599-3538|AAF46952.3|  705|Drosophila melanogaster CG9882-PA
           protein.
          Length = 705

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -1

Query: 572 LLKKVKRNTPNEFKILLHSCCFYSLPIRWNRLLQIRAGG*GAHGLKLR 429
           LL K+K   P   KI   S   Y+LP+ +  L +IRA      G  LR
Sbjct: 516 LLTKIKDRLPEGVKISPCSARIYALPVEFLDLHKIRAPVGSCEGFDLR 563


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,771,929
Number of Sequences: 53049
Number of extensions: 456092
Number of successful extensions: 936
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)