Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0410
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040649-2|AAB95004.2|  324|Caenorhabditis elegans Serpentine re...    29   2.1  
U58735-3|AAC48143.1|  337|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    28   4.8  

>AF040649-2|AAB95004.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein74 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 529 ILNSLGVFLFTFLSRYIFKF-YVLLLNKAVC 618
           ILNS+G++   F+S  + KF Y LLL +  C
Sbjct: 25  ILNSIGIYFLMFMSNQLGKFKYYLLLFQLSC 55


>U58735-3|AAC48143.1|  337|Caenorhabditis elegans Hypothetical
           protein F20B4.2 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -1

Query: 440 LKLREISNTSPSESS--VLQNLPPGRNRDPLRRSGEKLSGLCPWNNSLFVVIE 288
           L  R+   T+P  SS     NLPPGR RD + R  +  +    + +SL V++E
Sbjct: 248 LGYRDPHTTTPDSSSDHAAANLPPGRTRDYIPRKAK--APYINYVHSLSVMVE 298


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 428 EISNTSPSESSVLQNLPPGRNRDPLR 351
           E  + S S S V++N PP R R+P+R
Sbjct: 60  ESDSRSRSSSPVVKNSPPKRKREPIR 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,899
Number of Sequences: 27780
Number of extensions: 251352
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)