Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0410
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g48390.1 68416.m05282 MA3 domain-containing protein similar t... 31 0.84
At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t... 30 1.5
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t... 30 1.5
At2g46670.1 68415.m05824 pseudo-response regulator, putative / t... 30 1.5
At3g61120.1 68416.m06840 MADS-box protein (AGL13) 29 2.6
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 29 3.4
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 28 5.9
At4g36980.1 68417.m05240 expressed protein 28 5.9
At4g21960.1 68417.m03178 peroxidase 42 (PER42) (P42) (PRXR1) ide... 28 5.9
At2g33390.1 68415.m04093 expressed protein 28 5.9
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC... 27 7.8
>At3g48390.1 68416.m05282 MA3 domain-containing protein similar to
programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 633
Score = 30.7 bits (66), Expect = 0.84
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = -1
Query: 440 LKLREISNTSPSESSVLQNLPPGRNRDPLRRSGEKLSGLCPWNNSLFVVIEEFDRVGVFR 261
L L EISN+ P +S+ + + R+ R +GE+L L W +E+ + +++
Sbjct: 465 LNLEEISNSLPPKSTGSETIRSARSLISARHAGERL--LRSWGGGTGWAVED-AKDKIWK 521
Query: 260 LIGRFQVG 237
L+ ++VG
Sbjct: 522 LLEEYEVG 529
>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 351
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 378 TGSESRPTEKIRRETQWAVSME*FALCRNRRIRSSRCFQVNRTFSSRQK 232
+ S +P E+ + +W+ S AL + R R RCF + SR+K
Sbjct: 279 SSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 327
>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 468
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 378 TGSESRPTEKIRRETQWAVSME*FALCRNRRIRSSRCFQVNRTFSSRQK 232
+ S +P E+ + +W+ S AL + R R RCF + SR+K
Sbjct: 396 SSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 444
>At2g46670.1 68415.m05824 pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative
similar to pseudo-response regulator 9 [Arabidopsis
thaliana] GI:10281000, timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022
Length = 183
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 378 TGSESRPTEKIRRETQWAVSME*FALCRNRRIRSSRCFQVNRTFSSRQK 232
+ S +P E+ + +W+ S AL + R R RCF + SR+K
Sbjct: 111 SSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 159
>At3g61120.1 68416.m06840 MADS-box protein (AGL13)
Length = 244
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = -1
Query: 404 ESSVLQNLPPGRNRDPLRRSGEKLSGLCPWNNSLFVV-----IEEFDRVGVFRLIGRFQV 240
E+ + + + + + L + +LS LC SL + + EF VGV R I R+
Sbjct: 12 ENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYR 71
Query: 239 GKNNVID 219
K+N++D
Sbjct: 72 CKDNLLD 78
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 437 KLREISNTSPSESSVLQNLPPGRNRDPLRRSGEKLSGLC 321
K R+ + +L+N PP RN SG+ ++ LC
Sbjct: 1516 KRRKAKQKKKLQRGILENYPPRRNDGISSESGQNINSLC 1554
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 334 SFSPDLLSGSRFRPGGRF 387
+FSP ++SGS++RPG F
Sbjct: 464 AFSPSIVSGSQWRPGSPF 481
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 362 DPLRRSGEKLSGLCPWNNSLFVVIEEFD 279
D L ++ E GL PWN V+I+ FD
Sbjct: 54 DGLYQATEDQQGLIPWNGKQDVMIDRFD 81
>At4g21960.1 68417.m03178 peroxidase 42 (PER42) (P42) (PRXR1)
identical to SP|Q9SB81 Peroxidase 42 precursor (EC
1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b)
{Arabidopsis thaliana}
Length = 330
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = -1
Query: 383 LPPGRNRDPLRRSGEKLSGLCP-WNNSLFVVIEEF-----DRVGVFRLIGRFQVGKNNVI 222
L GR RD L+ + L P N S+ VV+E+F D G+ L+G VG+ + +
Sbjct: 147 LKTGR-RDGLKSRTDMLESYLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCV 205
Query: 221 DFV 213
V
Sbjct: 206 KLV 208
>At2g33390.1 68415.m04093 expressed protein
Length = 98
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 399 QCFAKSTTGSESRPTEKIRRETQW 328
QC G SR T+KI+R QW
Sbjct: 40 QCLLPPRKGGMSRSTDKIKRTVQW 63
>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 1495
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 253 PINLKTPTRSNSSITTKSELFHGHSPLSFSPDLLSGSRFRP 375
P N +S ITT+ ELF +S +S +S + F+P
Sbjct: 1098 PDNSSDDQSMDSDITTEQELFERNSQVSEEKSEVSSATFKP 1138
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,641,654
Number of Sequences: 28952
Number of extensions: 227211
Number of successful extensions: 517
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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