Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0409
(722 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
AM292376-1|CAL23188.2| 402|Tribolium castaneum gustatory recept... 23 1.9
AM292332-1|CAL23144.2| 344|Tribolium castaneum gustatory recept... 23 1.9
X06905-1|CAA30009.1| 489|Tribolium castaneum protein ( Triboliu... 23 3.3
U04271-2|AAA03709.1| 490|Tribolium castaneum alpha-amylase II p... 22 4.4
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 22 5.8
AM292381-1|CAL23193.2| 364|Tribolium castaneum gustatory recept... 21 7.6
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
+P +NE +PL V+F + +Q ID
Sbjct: 20 RPVANESEPLEVKFGLTLQQIID 42
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
+P +NE +PL V+F + +Q ID
Sbjct: 20 RPVANESEPLEVKFGLTLQQIID 42
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
+P +NE +PL V+F + +Q ID
Sbjct: 20 RPVANESEPLEVKFGLTLQQIID 42
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
+P +NE +PL V+F + +Q ID
Sbjct: 20 RPVANESEPLEVKFGLTLQQIID 42
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
+P +NE +PL V+F + +Q ID
Sbjct: 20 RPVANESEPLEVKFGLTLQQIID 42
>AM292376-1|CAL23188.2| 402|Tribolium castaneum gustatory receptor
candidate 55 protein.
Length = 402
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 100 FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 201
FGK T FFSD + D + D Y L R
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISD-NLYILCR 235
>AM292332-1|CAL23144.2| 344|Tribolium castaneum gustatory receptor
candidate 11 protein.
Length = 344
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 100 FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 201
FGK T FFSD + D + D Y L R
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISD-NLYILCR 235
>X06905-1|CAA30009.1| 489|Tribolium castaneum protein ( Tribolium
castaneum mRNAfor alhpa amylase 3'region. ).
Length = 489
Score = 22.6 bits (46), Expect = 3.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -3
Query: 300 DLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPRIFRGFQTFV 151
DLE +++ L LD Q + E +L GE+I + GF T +
Sbjct: 212 DLEAIYASLKNLNTDHGFLDGQKPFIFQEVIDLGGEAISKHEYTGFGTVI 261
>U04271-2|AAA03709.1| 490|Tribolium castaneum alpha-amylase II
protein.
Length = 490
Score = 22.2 bits (45), Expect = 4.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 300 DLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPRIFRGFQTFV 151
DLE ++ L LD Q + E +L GE+I + GF T +
Sbjct: 213 DLEAIYGSLKNLNTDHGFLDGQKPFIFQEVIDLGGEAISKHEYTGFGTVI 262
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory
receptor candidate 40 protein.
Length = 373
Score = 21.8 bits (44), Expect = 5.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -2
Query: 64 FPTNHQETSPQRIH 23
FP NH P+++H
Sbjct: 41 FPLNHLNEEPEKLH 54
>AM292381-1|CAL23193.2| 364|Tribolium castaneum gustatory receptor
candidate 60 protein.
Length = 364
Score = 21.4 bits (43), Expect = 7.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -2
Query: 151 HPLGR*RTFQQSI*TFQILFLGAHCTPNCFPTN 53
+P+G S+ F ++FL CT C N
Sbjct: 133 YPVGIVGVKNASLFIFDLIFLSFRCTKLCKEAN 165
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,694
Number of Sequences: 336
Number of extensions: 4622
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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