Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0409
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 261 5e-70
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 249 2e-66
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 246 1e-65
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 238 3e-63
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 129 3e-30
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 89 4e-18
06_03_1514 + 30696632-30696724,30696857-30697009,30697226-306973... 32 0.53
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 28 6.5
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 6.5
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 6.5
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 28 6.5
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 28 8.6
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 261 bits (639), Expect = 5e-70
Identities = 119/209 (56%), Positives = 156/209 (74%), Gaps = 2/209 (0%)
Frame = +1
Query: 1 ALSSINCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSE 174
+++++ +VFF+EKF +D WES WV SE E G++ T+GK+ DPED KG++TSE
Sbjct: 23 SVAAVAGEVFFQEKF-EDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPED-KGIQTSE 80
Query: 175 DARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEI 354
D RFYA+S ++ FSN+ K LV+QF+VKHEQ +DCGGGY+K+ ++QK G+TPY I
Sbjct: 81 DYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSI 140
Query: 355 MFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEK 534
MFGPDICG TKKVH IF+ KNHLIKKD+ C+ D +H+YTLI+ PD TY +LIDN +
Sbjct: 141 MFGPDICGYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVE 200
Query: 535 VESGDLEADWDFLPPKKIKDPEAKKPEDW 621
+SG + WD LPPK+IKDPEAKKPEDW
Sbjct: 201 KQSGSIYEHWDILPPKQIKDPEAKKPEDW 229
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 249 bits (609), Expect = 2e-66
Identities = 109/202 (53%), Positives = 150/202 (74%), Gaps = 2/202 (0%)
Frame = +1
Query: 22 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 195
+V FEE+F +D WES WV S+ E G FK TAG++ DP DDKG++T+ DAR +A+
Sbjct: 28 EVIFEERF-EDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDP-DDKGIQTTLDARHFAI 85
Query: 196 SRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDIC 375
S K FSN+G+ LV+Q+++K EQDI+CGGGY+K+ + QK G+TPY +MFGPDIC
Sbjct: 86 SAKIPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDIC 145
Query: 376 GPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLE 555
G TKK+H+I SY+G+N+ IKKD++C+ D TH+YT I++PD +Y +L+DN + ESG +
Sbjct: 146 GTQTKKLHLILSYQGQNYPIKKDLQCETDKLTHVYTFILRPDASYSILVDNRERESGSMY 205
Query: 556 ADWDFLPPKKIKDPEAKKPEDW 621
DWD LPP+KIKD AKKP+DW
Sbjct: 206 TDWDILPPRKIKDVHAKKPKDW 227
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 246 bits (602), Expect = 1e-65
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 12/219 (5%)
Frame = +1
Query: 1 ALSSINCDVFFEEKFPDDSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDD------- 153
+++++ +VFF+EKF DD WE WV SE G++ T+GK++ D +D
Sbjct: 19 SVAAVAGEVFFQEKF-DDGWEDRWVKSEWKKDDNRAGEWNHTSGKWYGDADDKGMCEVTL 77
Query: 154 ---KGLKTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQK 324
G++TSED RFYA+S K+ FS++ K LV+QF+VKHEQ +DCGGGY+K+ ++QK
Sbjct: 78 LLCAGIQTSEDYRFYAISAKYPEFSSKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQK 137
Query: 325 DMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDN 504
GETPY IMFGPDICG TKKVH I + GKNHLIKKD+ CK D TH+YTLI++PD
Sbjct: 138 KFGGETPYSIMFGPDICGYATKKVHAILTKNGKNHLIKKDVPCKTDQLTHVYTLIIRPDA 197
Query: 505 TYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 621
Y +LIDN + ++G + DW+ +PPK +DPEAKKPEDW
Sbjct: 198 KYSILIDNTEKQTGSIYDDWNIIPPKNKRDPEAKKPEDW 236
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 238 bits (583), Expect = 3e-63
Identities = 105/205 (51%), Positives = 146/205 (71%), Gaps = 2/205 (0%)
Frame = +1
Query: 13 INCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARF 186
++ +V FEE+F DD W S WV S+ E G FK TAG + DP DD+G++T+ DA+
Sbjct: 25 VSGEVIFEERF-DDDWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDP-DDRGIQTTSDAKH 82
Query: 187 YALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGP 366
+A+S KF FSN+ + LVVQ+++K EQDI+CGG Y+K+ + QK G+TPY MFGP
Sbjct: 83 FAISAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGP 142
Query: 367 DICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESG 546
DICG TKK+H+I SY+G+N+ IKKD++C+ D TH YT I++PD +Y +L+DN + E G
Sbjct: 143 DICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFYTFILRPDASYSLLVDNREREFG 202
Query: 547 DLEADWDFLPPKKIKDPEAKKPEDW 621
+ DWD LPP+KIK+ AKKP+DW
Sbjct: 203 SMYTDWDILPPRKIKESNAKKPKDW 227
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 577 PKKIKDPEAKKPEDW 621
PK+I DP+ KKPE W
Sbjct: 248 PKEIPDPKDKKPESW 262
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 129 bits (311), Expect = 3e-30
Identities = 88/215 (40%), Positives = 118/215 (54%), Gaps = 15/215 (6%)
Frame = +1
Query: 22 DVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 201
D F E F D+S+E WV S GK+ K K SD +D GL SE A+ YA+ +
Sbjct: 24 DPLFYEPF-DESFEGRWVLS---GKDDYKGVWKHEK--SDGHEDYGLLVSEKAKKYAIIK 77
Query: 202 KF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPD 369
+ +P + + +V+QF V+ + ++CGG YLK D + K+ ETPY IMFGPD
Sbjct: 78 ELDEPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPD 137
Query: 370 ICGPGTKKVHVIFSYK----GK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLID-N 528
CG T KVH I +K GK H +K D +H+YT I+KPDN +L+D
Sbjct: 138 KCG-STNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGE 196
Query: 529 EKVESGDLEADWDF----LPPKKIKDPEAKKPEDW 621
EK ++ L AD DF +P K I DP+ KKPEDW
Sbjct: 197 EKKKANFLSAD-DFEPSLIPSKTIPDPDDKKPEDW 230
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 490 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 621
VKPD+ E + E W P++I DPEA KPEDW
Sbjct: 242 VKPDDWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPEDW 285
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 88.6 bits (210), Expect = 4e-18
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +1
Query: 418 GKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDP 597
G NHLIKKD+ C+ D TH+YTLI++PD Y +LIDN + +G + D D LPPKK KDP
Sbjct: 515 GNNHLIKKDVPCETDQLTHVYTLIIRPDAKYSILIDNTEKRTGSIYGDCDNLPPKKKKDP 574
Query: 598 EAKK 609
EAKK
Sbjct: 575 EAKK 578
>06_03_1514 +
30696632-30696724,30696857-30697009,30697226-30697309,
30697451-30697569,30697769-30697870,30699071-30699190,
30699285-30699350,30699563-30699629,30699720-30699773,
30700379-30700534,30701130-30701228
Length = 370
Score = 31.9 bits (69), Expect = 0.53
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Frame = -3
Query: 492 HNQSVQMCVDIIFAADIFFDEMVLTLVTEDYVYLLGSRTTNVRAEHNLIWS-LSVHVLLL 316
HN + M V I ++ D M + ++Y +L NV HNL WS ++H+L
Sbjct: 88 HNALLAMAVGISQMQNV--DIMARKFLNQNYTVMLFHYDGNVDGWHNLEWSDKAIHILAR 145
Query: 315 Q-----FAVKDLEVSASTV-NVLFMFDSELDYQGF-------TLITERFELTGESIEP 181
FA + L + +F++D +L F +++E E+T +++P
Sbjct: 146 NQTKWWFAKRFLHPDVVAIYGFIFLWDEDLGVDNFDPRRYLDIMVSEGLEITQPALDP 203
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 28.3 bits (60), Expect = 6.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 528 IVNEDFIGVVRFHNQSVQMCVDI 460
+V EDF+ + F +Q+V +C+D+
Sbjct: 353 LVEEDFVQIAEFLHQAVTICLDV 375
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -1
Query: 371 MSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGL 228
M GP ++ ++P S +Q + +++ +SC+CL T+KGL
Sbjct: 674 MLGPTVLV--LAPTRELASQIQDEAVKFGRSSRVSCTCL-YGGTSKGL 718
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 278 QSMSCSCLTVNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPN 99
+S+ L+ N + G+P L GLN +++++ + P+ SSG L FP + N
Sbjct: 738 KSIGALDLSNNQLSGGIPPGLGGLNFLADF-DVSNNNLTGPIPSSGQLTTFPPSRYDNNN 796
Query: 98 SFPGCSL 78
G L
Sbjct: 797 GLCGIPL 803
>01_01_0588 +
4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 517 LIDNEKVESGDLEADWDFLPPKKIKDPE 600
L DN K+++GDL +W P + PE
Sbjct: 107 LTDNSKLDTGDLHGEWKEWRPTQCSVPE 134
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Frame = -3
Query: 390 LGSRTTNVRAEHNLIWSLSVHVL---LLQFAVKDLEV--SASTVNVLFMFDSEL-DY-QG 232
LGS T N+ A+H+ S H+ L +FAV E+ S N L +++++ D+ G
Sbjct: 701 LGSSTANLSADHDTSNLSSPHIAASSLSEFAVLGFELGYSMENPNSLVLWEAQFGDFSNG 760
Query: 231 FTLITERFELTGES 190
+I ++F +GE+
Sbjct: 761 AQVIFDQFLSSGEA 774
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,883,169
Number of Sequences: 37544
Number of extensions: 476341
Number of successful extensions: 1287
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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