Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0409
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 283 9e-77
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 283 9e-77
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 105 2e-23
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 30 1.5
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 30 1.5
AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical... 28 5.9
U58751-10|AAB00661.1| 205|Caenorhabditis elegans Hypothetical p... 28 7.8
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 283 bits (694), Expect = 9e-77
Identities = 126/204 (61%), Positives = 157/204 (76%), Gaps = 1/204 (0%)
Frame = +1
Query: 13 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 192
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 193 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 369
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 370 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 549
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190
Query: 550 LEADWDFLPPKKIKDPEAKKPEDW 621
LE DWD LP KKIKDP+AKKPEDW
Sbjct: 191 LEEDWDLLPAKKIKDPDAKKPEDW 214
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 559 DWDFLPPKKIKDPEAKKPEDW 621
DW+ P+ I DP+AKKPEDW
Sbjct: 230 DWE--KPEHIPDPDAKKPEDW 248
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 283 bits (694), Expect = 9e-77
Identities = 126/204 (61%), Positives = 157/204 (76%), Gaps = 1/204 (0%)
Frame = +1
Query: 13 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 192
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 193 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 369
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 370 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 549
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190
Query: 550 LEADWDFLPPKKIKDPEAKKPEDW 621
LE DWD LP KKIKDP+AKKPEDW
Sbjct: 191 LEEDWDLLPAKKIKDPDAKKPEDW 214
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 559 DWDFLPPKKIKDPEAKKPEDW 621
DW+ P+ I DP+AKKPEDW
Sbjct: 230 DWE--KPEHIPDPDAKKPEDW 248
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 105 bits (253), Expect = 2e-23
Identities = 64/174 (36%), Positives = 90/174 (51%), Gaps = 15/174 (8%)
Frame = +1
Query: 145 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKL 315
E D GL AR +A++ K PF+ + VVQ+ +K E+ +CGGGYLK+ +
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166
Query: 316 EQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 465
+ + +T Y IMFGPD CG T KVH+IF YK + + DD
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225
Query: 466 YTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD--FLPPKKIKDPEAKKPEDW 621
THL+TL+VKP Y V +D + + G++ +D PPK+I D KP DW
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDW 279
Score = 35.1 bits (77), Expect = 0.051
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 490 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 621
VKPD+ E + E+ DW+ + I DPEAKKP+DW
Sbjct: 291 VKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDW 334
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 523 DNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 621
+N + ES DWD P+ + D A KP DW
Sbjct: 283 ENIEDESAVKPDDWDENEPQSVVDEAATKPYDW 315
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 421 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 543
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 421 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 543
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical
protein Y105E8B.7 protein.
Length = 269
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 466 YTHLYTLIVKPDN-TYEVLIDNEKVESGDLEADWDFLPP 579
+TH +TL VKP N Y+ DN+ ++ E F P
Sbjct: 23 HTHKWTLFVKPGNRDYDEFPDNKLIQKVKFEIHESFAQP 61
>U58751-10|AAB00661.1| 205|Caenorhabditis elegans Hypothetical
protein C07G1.7 protein.
Length = 205
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 300 DLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPR 178
D E + +L D ++DY+ F + E+F G+S+ R
Sbjct: 130 DRETCEENIKILQREDRDVDYREFLTMAEKFNEEGQSLWAR 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,753,718
Number of Sequences: 27780
Number of extensions: 414587
Number of successful extensions: 1341
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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