Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0409
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.55 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.55 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.72 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.72 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.72 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.72 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.72 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.72 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.72 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.72 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 466 YTHLYTLIVKPDNTYEVLIDNEKVES 543
           Y H Y +  KP N  E++  N K+ES
Sbjct: 428 YYHSYKMHQKPYNKDEIIYPNLKIES 453


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 466 YTHLYTLIVKPDNTYEVLIDNEKVES 543
           Y H Y +  KP N  E++  N K+ES
Sbjct: 428 YYHSYKMHQKPYNKDEIIYPNLKIES 453


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
           +P +NE +PL V+F +  +Q ID
Sbjct: 71  RPVANESEPLEVKFGITLQQIID 93


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 KPFSNEGKPLVVQFTVKHEQDID 276
           +P +NE +PL V+F +  +Q ID
Sbjct: 71  RPVANESEPLEVKFGITLQQIID 93


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 164 KPLKMRGSMLSPVSSNRSVMRV 229
           +P   RG+++SP  + R  M+V
Sbjct: 893 EPYNQRGTVVSPPPTKRRTMKV 914


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 164 KPLKMRGSMLSPVSSNRSVMRV 229
           +P   RG+++SP  + R  M+V
Sbjct: 931 EPYNQRGTVVSPPPTKRRTMKV 952


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 320 CSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPS 222
           C+S  + T R P        C T N++T   P+
Sbjct: 751 CASTTTITARSPQGSQGLLQCATSNYSTTRWPA 783


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,459
Number of Sequences: 438
Number of extensions: 4747
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)