Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0406
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   5.6  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   7.4  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.4  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 16  KMSTIAAPLSVAGTRSCGDPVRTQNV 93
           K+STIA  L V  TRS   P  T+ +
Sbjct: 36  KLSTIALALGVERTRSELIPFLTETI 61


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 552 CTGNQNNEPQRKH 590
           C GN +N P R H
Sbjct: 341 CNGNAHNCPSRSH 353


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 552 CTGNQNNEPQRKH 590
           C GN +N P R H
Sbjct: 348 CNGNAHNCPSRSH 360


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,911
Number of Sequences: 336
Number of extensions: 3793
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)