Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0406
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 290 1e-79
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 145 5e-36
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 144 1e-35
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 144 1e-35
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 143 3e-35
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 131 1e-31
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 116 2e-27
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 111 1e-25
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 52 8e-08
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 2.6
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 25 8.0
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 8.0
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 25 8.0
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 290 bits (711), Expect = 1e-79
Identities = 144/222 (64%), Positives = 177/222 (79%)
Frame = +1
Query: 40 LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKM 219
L ++G + G+ VR QNV+ N+VKSSLGPVGLDKMLVDDIGDVTVTNDGATIL +
Sbjct: 10 LFLSGEKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSL 69
Query: 220 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 399
L+VEHPA KVLVELAQ QD+EVGDGTTSVVIIAAELL+ A+ELVK KIHPT+II+GYRLA
Sbjct: 70 LDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLA 129
Query: 400 CKEAVKYIQDNLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNP 579
+EAVK++ D L+ +V+SLG+ SLIN AKT+MSSK+IG D+DFFS M VDA ++KT N
Sbjct: 130 IREAVKFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNS 189
Query: 580 RGNTIYPIKAINILKAHGRSARGKCTCQRLCSELHCSITGNA 705
+G T YP+KA+NILKAHG+S+R + L+C+I A
Sbjct: 190 KGETRYPVKAVNILKAHGKSSRESVLVKGYA--LNCTIASQA 229
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = +2
Query: 584 ETLYTLSKLLTF*KPTAAVPGESVLVKGYALNCTVASQAM 703
ET Y + K + K ESVLVKGYALNCT+ASQAM
Sbjct: 192 ETRYPV-KAVNILKAHGKSSRESVLVKGYALNCTIASQAM 230
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 145 bits (352), Expect = 5e-36
Identities = 77/178 (43%), Positives = 118/178 (66%), Gaps = 5/178 (2%)
Frame = +1
Query: 49 AGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDI-GDVTVTNDGATILKMLE 225
+G + G+ R + + ++VKS+LGP G+DK+L + GD+ VTNDGATILK +
Sbjct: 12 SGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIA 71
Query: 226 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 405
+++ AAKVLV ++++QD+EVGDGTTSV + AAELL+ A+ +V KIHP II GYR+A K
Sbjct: 72 LDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATK 131
Query: 406 EAVKYIQ----DNLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIK 567
A+ ++ DN + + R L N A+TT+SSK++ + + F+++ VDA +K
Sbjct: 132 TAIDALRASSIDNSSDPAKF--RSDLENIARTTLSSKILSQNKNHFAQLAVDAVLRLK 187
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 144 bits (349), Expect = 1e-35
Identities = 78/186 (41%), Positives = 117/186 (62%)
Frame = +1
Query: 76 VRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLV 255
VR N+M + +++SLGP G+DKM+ G+V +TNDGATILK L V HPAAK+LV
Sbjct: 20 VRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLV 79
Query: 256 ELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNL 435
+L+ QD E GDGTTSVVI+A +L A++L+K IHPT I ++ A V +++N
Sbjct: 80 DLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKEN- 138
Query: 436 TVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTIYPIKAIN 615
+ +E R SL+ A T+++SK++ ++ + + VDA +K ++PR T +K I
Sbjct: 139 ALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDA--VLKVIDPRVATNVDLKDIR 196
Query: 616 ILKAHG 633
I+K G
Sbjct: 197 IVKKLG 202
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 144 bits (348), Expect = 1e-35
Identities = 72/166 (43%), Positives = 109/166 (65%), Gaps = 1/166 (0%)
Frame = +1
Query: 70 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKV 249
D V++ +++ NIV++SLGP GLDK+L+ G++TVTNDGATIL +EVEH AK+
Sbjct: 34 DAVKS-HILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKL 92
Query: 250 LVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQD 429
LV+L++ QD+E+GDGTT VV++A LL+ A+ L+ IHP I GY AC+ AVK++
Sbjct: 93 LVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDA 152
Query: 430 -NLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAI 564
+ V +L +AKT++ SK++ D F+ + VDA ++
Sbjct: 153 ISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSV 198
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 143 bits (346), Expect = 3e-35
Identities = 75/172 (43%), Positives = 112/172 (65%), Gaps = 3/172 (1%)
Frame = +1
Query: 88 NVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQ 267
N+ + ++++LGP+G DK++VDD G+V ++NDGATI+K+L++ HPAAK LV++A+
Sbjct: 29 NINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIAR 88
Query: 268 LQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQD---NLT 438
QD EVGDGTTSVV+ A ELL+ A V+ + II GYR A + AV I++ +L
Sbjct: 89 AQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAIHLD 148
Query: 439 VTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTI 594
++ E R L A T M+SKLI +++ FF++MVVDA + + N I
Sbjct: 149 LSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLNENMI 200
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 131 bits (316), Expect = 1e-31
Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 1/182 (0%)
Frame = +1
Query: 40 LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKM 219
++ G R G + N+ +++++ LGP + KML+D +G V +TNDG IL+
Sbjct: 8 MNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILRE 67
Query: 220 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 399
+EV HPAAK ++ELA+ QDEEVGDGTTSV+I+A E+L A L+ KIHP +I ++ A
Sbjct: 68 IEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQA 127
Query: 400 CKEAVKYIQDNLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAI-KTMN 576
++A+ I D +T+ V + +T + +KL+ +D + + A + + T N
Sbjct: 128 LEDALSII-DEITLPVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVRTVASTSN 186
Query: 577 PR 582
R
Sbjct: 187 GR 188
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 116 bits (280), Expect = 2e-27
Identities = 63/185 (34%), Positives = 104/185 (56%)
Frame = +1
Query: 88 NVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQ 267
N+ +++KS+LGP G KMLVD G + +T DG +L +++++P A + + A
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAAT 80
Query: 268 LQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTV 447
QD+ GDGTTSV ++ ELLK A+ ++ +HP+ I G+ LA EA+ ++ D+
Sbjct: 81 AQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFL-DSFKTDF 139
Query: 448 ESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTIYPIKAINILKA 627
E + R L+N AKT++S+K+ + + VVDA I+ R + + + I+K
Sbjct: 140 E-VDREVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIR----RPDEPIDLHMVEIMKM 194
Query: 628 HGRSA 642
RSA
Sbjct: 195 QNRSA 199
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 111 bits (266), Expect = 1e-25
Identities = 60/175 (34%), Positives = 103/175 (58%), Gaps = 1/175 (0%)
Frame = +1
Query: 118 IVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDGT 297
I ++SLGP G +K++V+ + +TND ATI++ LEV HPAAK++V+ Q Q+ E+GD
Sbjct: 41 ITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAA 100
Query: 298 TSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTVESL-GRPSLI 474
VV+ ELL A+ +++ + P I GY +A ++ +++ +E++ LI
Sbjct: 101 NFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELI 160
Query: 475 NTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTIYPIKAINILKAHGRS 639
+T +SSK G + DF S++V A+AI T+ P+ + + + I ++K G S
Sbjct: 161 KAIRTCISSKQYG-NEDFLSDLV---AKAILTVLPKDPSKFNVDNIRVVKIMGSS 211
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 52.0 bits (119), Expect = 8e-08
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Frame = +1
Query: 121 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEV----EHPAAKVLVELAQLQDEEVG 288
V +LGP G + ++ G +T DG T+ + + + E+ A+++ ++A +E G
Sbjct: 58 VSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAG 117
Query: 289 DGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNL--TVTVESLGR 462
DGTT+ ++ + V +P + G +LA V+++Q N T E + +
Sbjct: 118 DGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQANKRDITTSEEISQ 177
Query: 463 PSLINTAKTTMSSKLI 510
+ I+ T +L+
Sbjct: 178 VATISANGDTHIGELL 193
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 298 TSVVIIAAELLKNADELVKTKIHPTSIISGY 390
T++++++ LL E + TK+HP+ +S Y
Sbjct: 302 TNLIVVSVALLHQWAEELSTKVHPSKKLSVY 332
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 25.4 bits (53), Expect = 8.0
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 128 APLGQLVWTRCWLTILGM 181
+PL +++W CW +LG+
Sbjct: 149 SPLSKMMWVFCWRWLLGV 166
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 262 AQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLT 438
A L DE G V+++A + K LV I+P ++ A +K DN+T
Sbjct: 192 ASLLDEGTAAGEAMVMLMANDKKKRKTFLVDKNIYPNTLSVLRTRASGFGIKIELDNIT 250
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.4 bits (53), Expect = 8.0
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 128 APLGQLVWTRCWLTILGM 181
+PL +++W CW +LG+
Sbjct: 149 SPLSKMMWVFCWRWLLGV 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,155
Number of Sequences: 5004
Number of extensions: 58150
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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