Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0406
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 143 1e-34
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 142 2e-34
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 5e-19
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 89 3e-18
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 2e-17
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 86 2e-17
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 73 2e-13
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 58 9e-09
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 50 2e-06
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 50 2e-06
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.074
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 31 0.69
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8) 31 0.69
SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8) 31 1.2
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017) 30 1.6
SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17) 29 2.8
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 28 6.4
SB_26251| Best HMM Match : RVT_1 (HMM E-Value=0.0014) 28 8.5
SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1) 28 8.5
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 143 bits (346), Expect = 1e-34
Identities = 74/165 (44%), Positives = 111/165 (67%), Gaps = 3/165 (1%)
Frame = +1
Query: 79 RTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVE 258
+ +++ +I+K+SLGP G+DKM+V G+VTVTNDGATIL M+EV+H AK++VE
Sbjct: 32 KQSHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVE 91
Query: 259 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKY---IQD 429
L++ QD E+GDGTT VV++A LL++A++L+ IHP I GY LA K A+++ I D
Sbjct: 92 LSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIAD 151
Query: 430 NLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAI 564
N V ++ + SLI TA TT+ SK++ +E+ VDA ++
Sbjct: 152 NFPVDKDN--KESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSV 194
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 142 bits (344), Expect = 2e-34
Identities = 72/155 (46%), Positives = 110/155 (70%), Gaps = 4/155 (2%)
Frame = +1
Query: 115 NIVKSSLGPVGLDKMLVD--DIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVG 288
++VKS+LGP G+DK+L G++ VTNDGATILK + +++PAAK+LVEL+++QD+EVG
Sbjct: 34 DLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKSIGIDNPAAKILVELSKVQDDEVG 93
Query: 289 DGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLT--VTVESLGR 462
DGTTSV ++ +ELLK A++LV KIHP +I++G+R + K A K ++ + R
Sbjct: 94 DGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFR 153
Query: 463 PSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIK 567
L+N A+TT+SSK++ D F+++ VDA +K
Sbjct: 154 EDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLK 188
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 91.9 bits (218), Expect = 5e-19
Identities = 38/83 (45%), Positives = 62/83 (74%)
Frame = +1
Query: 187 VTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIH 366
+TNDG IL+ ++V+HPAAK ++E+++ QDEEVGDGTTSV+I+A E + A+ ++ ++H
Sbjct: 1 MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60
Query: 367 PTSIISGYRLACKEAVKYIQDNL 435
PT II+ YRLA + + ++ +
Sbjct: 61 PTQIIAAYRLAMDDMIDILKQQI 83
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 89.0 bits (211), Expect = 3e-18
Identities = 45/105 (42%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Frame = +1
Query: 259 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLT 438
L+++QD+EVGDGTTSV ++A+ELLK A++LV KIHP +I++G+R + K A K ++
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAV 61
Query: 439 --VTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIK 567
+ R L+N A+TT+SSK++ D F+++ VDA +K
Sbjct: 62 DHSSDPEKFRDDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLK 106
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 86.6 bits (205), Expect = 2e-17
Identities = 45/115 (39%), Positives = 74/115 (64%)
Frame = +1
Query: 223 EVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLAC 402
+++HP A ++ +A QD+ GDGTTS V+I ELLK AD V +HP + G+ +A
Sbjct: 170 QIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAK 229
Query: 403 KEAVKYIQDNLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIK 567
K+A++ +++ + V+ E + R +LIN AKT++ +K+ AD +E+VVDA I+
Sbjct: 230 KKALEVLEE-VKVSRE-MDRDTLINVAKTSLRTKVRTELADLLTEVVVDAVLTIR 282
>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
Length = 131
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/91 (45%), Positives = 57/91 (62%)
Frame = +1
Query: 433 LTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTIYPIKAI 612
+T++V+ LGR +++ A T +SSKLIG DFF+ M+VDA A+K +G YPIKAI
Sbjct: 1 MTISVDELGRDCIVSAANTALSSKLIGQQGDFFANMIVDAVMAVKRTGNKGEAKYPIKAI 60
Query: 613 NILKAHGRSARGKCTCQRLCSELHCSITGNA 705
N+LKAHG SA+ L+C+I A
Sbjct: 61 NVLKAHGGSAKESILVDGYA--LNCTIASQA 89
Score = 41.1 bits (92), Expect = 9e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2
Query: 647 ESVLVKGYALNCTVASQAMP 706
ES+LV GYALNCT+ASQAMP
Sbjct: 72 ESILVDGYALNCTIASQAMP 91
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 79.8 bits (188), Expect = 2e-15
Identities = 32/72 (44%), Positives = 54/72 (75%)
Frame = +1
Query: 220 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 399
++V+HPAAK ++E+++ QDEEVGDGTTSV+I+A E + A+ ++ ++HPT II+ YRLA
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 268
Query: 400 CKEAVKYIQDNL 435
+ + ++ +
Sbjct: 269 MDDMIDILKQQI 280
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/74 (44%), Positives = 50/74 (67%)
Frame = +1
Query: 61 SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPA 240
S G P N+ + V+++LGP G+DK++VD G T++NDGATI+ +L++ HPA
Sbjct: 651 SQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATIINLLDIVHPA 710
Query: 241 AKVLVELAQLQDEE 282
AK LV++A+ QD E
Sbjct: 711 AKTLVDIAKSQDAE 724
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 57.6 bits (133), Expect = 9e-09
Identities = 27/72 (37%), Positives = 43/72 (59%)
Frame = +1
Query: 118 IVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDGT 297
I+K S GP GLD ML G++ +TN G+ IL+ L + +P +++VE A+ G G
Sbjct: 15 ILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTGSGA 74
Query: 298 TSVVIIAAELLK 333
+ +II AE+ +
Sbjct: 75 SYFIIILAEIFR 86
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 50.0 bits (114), Expect = 2e-06
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Frame = +1
Query: 121 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEV----EHPAAKVLVELAQLQDEEVG 288
V +LGP G + ++ G +T DG T+ K +E+ ++ A+++ ++A +EE G
Sbjct: 83 VAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAG 142
Query: 289 DGTTSVVIIAAELLKNADELVKTKIHPTSIIS-----GYRLACKEAVKYIQDNL------ 435
DGTT+ ++A + V +P + S GY A V IQ +
Sbjct: 143 DGTTTATVLARSIATEGFLHVSKGANPQEVSSLENAMGYDAANNTYVDMIQAGIIDPTKV 202
Query: 436 --TVTVESLGRPSLINTAKTTM 495
T ++ G SL+ TA+T +
Sbjct: 203 VRTAITDAAGVASLLTTAETVI 224
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +1
Query: 76 VRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI--LKMLEVE-HPAAK 246
+R N+ + +++SLGP G+DKM+ GDVT+TNDGATI + +++E P K
Sbjct: 25 IRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATIKLIDTVDLEGGPVGK 84
Query: 247 VLVELAQLQDEEVGD 291
+V A + G+
Sbjct: 85 PVVPAALMNRPTRGE 99
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 34.7 bits (76), Expect = 0.074
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 460 RPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNP 579
R L A T +SSKLI +FF++MVVDA + + P
Sbjct: 21 RQLLERCAATALSSKLIATQKEFFAKMVVDAVMMLDELLP 60
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = -2
Query: 198 IVSDCNIPNIVNQHLVQTNWPKGALYYVCYSRCCHYVLCSHWVSA----GSCSC 49
+ +PN + + T PKG Y C +C + C H + G+CSC
Sbjct: 70 VTQGTTVPNAIEGEICNTRCPKGYYGYGCSKKCSN---CQHGATCDPVNGTCSC 120
>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
Length = 922
Score = 31.5 bits (68), Expect = 0.69
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 319 AELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTVESLGRPSLI-NTAKTTM 495
A LL A+ ++ ++HP+S + A + + +TV V+ RPS +T KTT
Sbjct: 121 ASLLPRAESVLSKQVHPSSADGNNKGANDSSSDKVSSEVTVPVDEDIRPSTAGDTDKTTT 180
Query: 496 SSKLIGADADFFSEMVVDAAQA 561
S ++ ++ D QA
Sbjct: 181 DSSADNVTSEVTVQVDEDNKQA 202
>SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1607
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 666 PLTSTLSPGTAAVGFQNVNSFDRVYSVSSGVHCF 565
PL + + PG AAVG N+ DR Y S H F
Sbjct: 881 PLPTQILPGNAAVGDWKYNAADRAYYSPSTSHVF 914
>SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)
Length = 1699
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 666 PLTSTLSPGTAAVGFQNVNSFDRVYSVSSGVHCF 565
PL + + PG AAVG N+ DR Y S H F
Sbjct: 827 PLPTQILPGNAAVGDWKYNAADRAYYSPSTSHVF 860
>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 322 ELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNL 435
E + A+ ++ ++HPT II+ YRLA + + ++ +
Sbjct: 3 EFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQI 40
>SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)
Length = 472
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = -2
Query: 207 CGTIVSDCNIPNIVNQHLVQTNWPKGALYYVCYSRCCHYVLCSHWVSAGSCSCYRQRCG 31
C + +DCN L +G CY CC LC+++V + + R G
Sbjct: 388 CSVVSADCNENGTRCDRLTSVLKDRGLTLKNCYVNCCQGDLCNNFVPSPTPEVMMARSG 446
>SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)
Length = 197
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 274 DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTVES 453
DE+V DG I+AAE + + + PTS+ +GY +A V+ I + + +
Sbjct: 98 DEDVPDGAP---IVAAEAVNSTSLRINCTTLPTSVANGYVIAFNVYVESIDGSHKLIEKK 154
Query: 454 LGRPSLI-NTAKTTM 495
G S++ + K TM
Sbjct: 155 DGLTSVVPSLQKFTM 169
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +1
Query: 154 KMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDGTTS--VVIIAAEL 327
K L DD+GD+ + + + +E H A + + V DG V + E
Sbjct: 285 KGLFDDVGDMGHKELKSVVKRSMEEHHAKAASAYFMRYFNEYRVSDGLLDGPFVKMGVET 344
Query: 328 LKNADELVKTKIHPTSI 378
+K + VK I T I
Sbjct: 345 VKETMQFVKQMIKSTGI 361
>SB_26251| Best HMM Match : RVT_1 (HMM E-Value=0.0014)
Length = 391
Score = 27.9 bits (59), Expect = 8.5
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Frame = +1
Query: 154 KMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLK 333
K + DD+ +T+T+ A IL+ +EH +V L Q G TT ++ ++
Sbjct: 98 KTVEDDLRPITLTSPLAKILEGFTLEHLMNQVAENLDIKQFSMTGRSTTHALVYMLHIIL 157
Query: 334 NA-DELVK-------TKIHPT--SIISGYRLA-CKEAVKYIQDNLTVTVESLGRPSLI 474
A D++V TK P +I+ LA VKY+ D + PS I
Sbjct: 158 AALDKVVSNGGIPQGTKSAPLLFAILVNRMLARWPNRVKYVDDTTVFEIVPRCSPSYI 215
>SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)
Length = 556
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 375 HYLGIPSCLQRSSQVHSG*PHSNSRVTWQAVSDQHSQNY 491
H L + C + S+ + S H N +T A SD H Q Y
Sbjct: 445 HVLPVYRCARGSTSLESFHLHINRFITGTAASDAHYQTY 483
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,184,530
Number of Sequences: 59808
Number of extensions: 478917
Number of successful extensions: 1186
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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