Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0406
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 290 5e-79
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 151 6e-37
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 149 2e-36
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 135 3e-32
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 127 6e-30
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 123 1e-28
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 122 3e-28
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 103 9e-23
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 101 5e-22
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 78 5e-15
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 58 4e-09
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 54 1e-07
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 54 1e-07
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 52 3e-07
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 52 4e-07
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 52 4e-07
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 52 5e-07
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 46 2e-05
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 42 3e-04
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 42 4e-04
At1g05790.1 68414.m00605 lipase class 3 family protein contains ... 30 1.7
At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containi... 29 3.0
At5g49750.1 68418.m06162 leucine-rich repeat family protein cont... 29 4.0
At1g28360.1 68414.m03484 ERF domain protein 12 (ERF12) identical... 29 4.0
At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr... 27 9.2
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 290 bits (712), Expect = 5e-79
Identities = 144/209 (68%), Positives = 167/209 (79%)
Frame = +1
Query: 19 MSTIAAPLSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTND 198
MS A ++G R G VRTQNVM NIVK+SLGPVGLDKMLVDDIGDVT+TND
Sbjct: 1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60
Query: 199 GATILKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSI 378
GATIL+MLEVEHPAAKVLVELA+LQD EVGDGTTSVVI+AAELLK A++LV+ KIHPTSI
Sbjct: 61 GATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120
Query: 379 ISGYRLACKEAVKYIQDNLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQ 558
ISGYRLA +E+ KYI++ L VE LG+ LIN AKT+MSSKLI D+DFF+ +VV+A
Sbjct: 121 ISGYRLAMRESCKYIEEKLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVL 180
Query: 559 AIKTMNPRGNTIYPIKAINILKAHGRSAR 645
++K N RG YPIK INILKAHG+SAR
Sbjct: 181 SVKMTNQRGEIKYPIKGINILKAHGQSAR 209
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 151 bits (365), Expect = 6e-37
Identities = 76/172 (44%), Positives = 114/172 (66%), Gaps = 4/172 (2%)
Frame = +1
Query: 61 SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPA 240
S G N+ ++V+++LGP G+DK++ DD G VT++NDGATI+K+L++ HPA
Sbjct: 19 SQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPA 78
Query: 241 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKY 420
AK+LV++A+ QD EVGDGTT+VV++AAE LK A ++ +H ++I YR A A+
Sbjct: 79 AKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAIAK 138
Query: 421 IQDNLTVTVESLG----RPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAI 564
+++ L V++E + L A TT+SSKLIG + +FF+ MVVDA AI
Sbjct: 139 VKE-LAVSIEGKSVEEKKGLLAKCAATTLSSKLIGGEKEFFATMVVDAVMAI 189
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 149 bits (361), Expect = 2e-36
Identities = 89/199 (44%), Positives = 130/199 (65%), Gaps = 6/199 (3%)
Frame = +1
Query: 67 GDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGD--VTVTNDGATILKMLEVEHPA 240
G+ R + + ++VKS+LGP G+DK+L VTVTNDGATILK L +++PA
Sbjct: 16 GERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATILKSLHIDNPA 75
Query: 241 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEA--- 411
AKVLV+++++QD+EVGDGTTSVV++A ELL+ A++LV +KIHP +II+GYR+A + A
Sbjct: 76 AKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMASECARNA 135
Query: 412 -VKYIQDNLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGN 588
+K + DN E R L+ A TT+ SK++ D + F+EM VDA +K G+
Sbjct: 136 LLKRVIDNKD-NAEKF-RSDLLKIAMTTLCSKILSQDKEHFAEMAVDAVFRLK-----GS 188
Query: 589 TIYPIKAINILKAHGRSAR 645
T ++AI I+K G S +
Sbjct: 189 T--NLEAIQIIKKPGGSLK 205
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 135 bits (326), Expect = 3e-32
Identities = 74/188 (39%), Positives = 110/188 (58%)
Frame = +1
Query: 70 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKV 249
+ +R N+ + V++SLGP G+DKM+ G+V +TNDGATIL +EV PAAK+
Sbjct: 27 EDIRFANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKM 86
Query: 250 LVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQD 429
LVEL++ QD GDGTT+VV+IA LLK L+ IHPT I AC +A+ I
Sbjct: 87 LVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAID-ILT 145
Query: 430 NLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTIYPIKA 609
+ V VE R SL+ +A T+++SK++ + + + VDA + ++P I ++
Sbjct: 146 AMAVPVELTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDA--VLSVIDPEKPEIVDLRD 203
Query: 610 INILKAHG 633
I I+K G
Sbjct: 204 IKIVKKLG 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 127 bits (307), Expect = 6e-30
Identities = 69/185 (37%), Positives = 107/185 (57%), Gaps = 1/185 (0%)
Frame = +1
Query: 55 TRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEH 234
TR G + N+ I++SSLGP G+DKML GD+T+TNDGATIL+ ++V++
Sbjct: 22 TRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDN 81
Query: 235 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAV 414
AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY +A + AV
Sbjct: 82 QIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAV 141
Query: 415 KYIQD-NLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNT 591
++++ + L+ T TT+SSK++ +E+ V A A+ + R
Sbjct: 142 EHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVN 201
Query: 592 IYPIK 606
+ IK
Sbjct: 202 LDLIK 206
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 123 bits (297), Expect = 1e-28
Identities = 60/175 (34%), Positives = 103/175 (58%)
Frame = +1
Query: 40 LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKM 219
LS + R G V N+ +I++++LGP + KML+D G + VTNDG IL+
Sbjct: 8 LSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILRE 67
Query: 220 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 399
L+V HPAAK ++EL++ QDEEVGDGTTSV+++A E+L A+ ++ HPT I Y A
Sbjct: 68 LDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKA 127
Query: 400 CKEAVKYIQDNLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAI 564
++++ + D + ++++ R ++ K+ + +K D +++ +DA +
Sbjct: 128 LEDSIA-VLDKIAMSIDINDRSQVLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 181
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 122 bits (293), Expect = 3e-28
Identities = 65/198 (32%), Positives = 111/198 (56%), Gaps = 3/198 (1%)
Frame = +1
Query: 70 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKV 249
D +N+ I ++SLGP G++KM+++ + + VTND ATI+ LE++HPAAK+
Sbjct: 26 DEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEIQHPAAKL 85
Query: 250 LVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQ- 426
LV A+ Q EE+GDG + A ELL+NA+EL++ +HP+ IISGY A +AV+ ++
Sbjct: 86 LVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAVEILEQ 145
Query: 427 --DNLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTIYP 600
+ + T++ + +I+ + ++SK G + + +V DA + NP T +
Sbjct: 146 LVETGSETMDVRNKDEVISRMRAAVASKQFGQE-EIICSLVTDACIQVCPKNP---TNFN 201
Query: 601 IKAINILKAHGRSARGKC 654
+ + + K G C
Sbjct: 202 VDNVRVSKLLGGGLHNSC 219
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 103 bits (248), Expect = 9e-23
Identities = 51/153 (33%), Positives = 93/153 (60%), Gaps = 2/153 (1%)
Frame = +1
Query: 115 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDG 294
+++KS+LGP G KMLV GD+ +T DG T+LK +++++P A ++ A QD+ GDG
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDG 90
Query: 295 TTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTV--ESLGRPS 468
TTS VI EL+K ++ + +HP ++ G+ +A + ++++ + T V + + +
Sbjct: 91 TTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDNFKTPVVMGDEVDKEI 150
Query: 469 LINTAKTTMSSKLIGADADFFSEMVVDAAQAIK 567
L A+TT+ +KL AD +++VV++ I+
Sbjct: 151 LKMVARTTLRTKLYEGLADQLTDIVVNSVLCIR 183
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 101 bits (242), Expect = 5e-22
Identities = 51/153 (33%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Frame = +1
Query: 115 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDG 294
+++KS+LGP G KMLV GD+ +T DG T+LK +++++P A ++ A QD+ GDG
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDG 90
Query: 295 TTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTV--ESLGRPS 468
TTS VI EL+K ++ + +HP ++ G+ +A + ++++ T V + +
Sbjct: 91 TTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPVVMGDEPDKEI 150
Query: 469 LINTAKTTMSSKLIGADADFFSEMVVDAAQAIK 567
L A+TT+ +KL AD +++VV++ I+
Sbjct: 151 LKMVARTTLRTKLYEGLADQLTDIVVNSVLCIR 183
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 78.2 bits (184), Expect = 5e-15
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Frame = +1
Query: 220 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 399
++V++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY +A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 400 CKEAVKYIQD-NLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMN 576
+ AV++++ + L+ T TT+SSK++ +E+ V A A+ +
Sbjct: 61 SRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLE 120
Query: 577 PRGNTIYPIK 606
R + IK
Sbjct: 121 RRDVNLDLIK 130
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 58.4 bits (135), Expect = 4e-09
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Frame = +1
Query: 121 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLE----VEHPAAKVLVELAQLQDEEVG 288
V +LGP G + +L + + V NDG TI K +E +E+ A ++ E+A +E G
Sbjct: 59 VSITLGPRGRNVVLAEK-DTIKVINDGVTIAKSIELPDTIENAGATLIQEVAIKMNESAG 117
Query: 289 DGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQ 426
DGTT+ +I+A E++K + + S+ +G KE V+ +Q
Sbjct: 118 DGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVKELVRVLQ 163
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Frame = +1
Query: 115 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP----AAKVLVELAQLQDEE 282
++V +LGP G + +L G + NDG T+ + +E+E P AK++ + A ++
Sbjct: 76 DLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDL 135
Query: 283 VGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAV 414
GDGTT+ V++A L+ ++V +P I G K V
Sbjct: 136 AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALV 179
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Frame = +1
Query: 130 SLGPVGLDKMLVDDIGDVTVTNDGATILKMLEV----EHPAAKVLVELAQLQDEEVGDGT 297
+LGP G + +L D+ G V NDG TI + +E+ E+ A ++ E+A ++ GDGT
Sbjct: 75 TLGPRGRNVVL-DEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGT 133
Query: 298 TSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQ 426
T+ I+A E++K+ V + +P S+ G + ++ +Q
Sbjct: 134 TTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQ 176
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Frame = +1
Query: 115 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP----AAKVLVELAQLQDEE 282
++V +LGP G + +L G + NDG T+ + +E+E P AK++ + A ++
Sbjct: 76 DLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDL 135
Query: 283 VGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQ 426
GDGTT+ V++A + ++V +P I G K V ++
Sbjct: 136 AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELK 183
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Frame = +1
Query: 115 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP----AAKVLVELAQLQDEE 282
++V +LGP G + +L G + NDG T+ + +E+E P AK++ + A ++
Sbjct: 80 DLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDL 139
Query: 283 VGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAV 414
GDGTT+ V++A + ++V +P I G K V
Sbjct: 140 AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALV 183
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Frame = +1
Query: 115 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP----AAKVLVELAQLQDEE 282
++V +LGP G + +L G + NDG T+ + +E+E P AK++ + A ++
Sbjct: 80 DLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDL 139
Query: 283 VGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAV 414
GDGTT+ V++A + ++V +P I G K V
Sbjct: 140 AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALV 183
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 SLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQ----LQDEEVGDGT 297
+LGP G + +L + G + NDG T+LK +E+E P V V+L + ++ GDG+
Sbjct: 69 TLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGS 128
Query: 298 TSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAV 414
T+ +I+A L+ +++ +P + G K V
Sbjct: 129 TTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALV 167
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Frame = +1
Query: 121 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLE----VEHPAAKVLVELAQLQDEEVG 288
VK ++GP G + ++ G VT DG T+ K +E +++ A ++ ++A ++ G
Sbjct: 58 VKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATNDVAG 117
Query: 289 DGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQ 426
DGTT ++ + + V ++ + G +LA V +Q
Sbjct: 118 DGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVVTNLQ 163
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +1
Query: 121 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLE----VEHPAAKVLVELAQLQDEEVG 288
VK ++GP G + ++ G VT DG T+ K +E +++ A ++ ++A ++ G
Sbjct: 57 VKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAG 116
Query: 289 DGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAV 414
DGTT ++ + + V ++ + G +A V
Sbjct: 117 DGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVV 158
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +1
Query: 121 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPA----AKVLVELAQLQDEEVG 288
VK ++GP G + ++ G +T DG T+ K + + A A+++ ++A ++ G
Sbjct: 57 VKVTMGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAG 116
Query: 289 DGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAV 414
DGTT ++ +L + V ++ + G +A V
Sbjct: 117 DGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVV 158
>At1g05790.1 68414.m00605 lipase class 3 family protein contains
Pfam profile PF01764: Lipase
Length = 687
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 547 LQPSPRRNLHQLQLV*MTW*FWLC*SETACQVTLLLL*GYPECT*LLL--CRQDGIPR*C 374
+ SP +N HQ +L TW +W + A +T+L G L +DG+PR C
Sbjct: 75 IMDSPTQNNHQRKLKYKTWLWW---TRFAMVITVLQFIGATYLLFRLAKYVSRDGLPRNC 131
Query: 373 LLG 365
+LG
Sbjct: 132 VLG 134
>At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 700
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 663 LTSTLSPGTAAVGFQNVNSFDRVYSVSSGVHCFDCLCSIY 544
L + + G +GFQ +S Y +S V +DC+ +Y
Sbjct: 604 LQACIREGHVELGFQYFSSMSTKYHISPQVEHYDCMIELY 643
>At5g49750.1 68418.m06162 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 493
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 379 ISGYRLACKEAVKYIQDNLTVTVESLGRPSLINTAKTTMSSKLIGADADFFSEMV 543
I+GY+ A E +K I N V E +PS + K + S + D F + +
Sbjct: 431 ITGYKQAANEHIKVILANNPVCGEVGNKPSFCSAIKHSSSFSTLQTIKDLFKKFI 485
>At1g28360.1 68414.m03484 ERF domain protein 12 (ERF12) identical to
ERF domain protein 12(AtERF12) GI:15207791 from
[Arabidopsis thaliana]
Length = 189
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 693 DATVQFRA*PLTSTLSPGTAAVGFQNVNSFDRVYSVSSGV 574
+A + F + P T+T SPG VGF +NS +V G+
Sbjct: 138 EAPLYFTSSPNTATSSPGYQVVGFPMMNSSPSPVTVRRGL 177
>At5g16000.1 68418.m01871 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 638
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 340 DELVKTKIHPTSIISGYRLACKEAVKYIQ-DNLTVTVESLGRPSLINTAKTTMSSKLIGA 516
DE+V+ + T + G+R E V+ ++ D L E+ R ++ ++ + +
Sbjct: 556 DEMVRVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQRSDSVSKCSNRINELM--S 613
Query: 517 DADFFSEMVVDAAQAIKTMNPRG 585
+D +S++ D++ ++ M G
Sbjct: 614 SSDRYSDLTDDSSLLVQAMELSG 636
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,339,442
Number of Sequences: 28952
Number of extensions: 318256
Number of successful extensions: 877
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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