Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0405
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      29   0.83 
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    27   3.3  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   4.4  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   4.4  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   5.8  

>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 531 EEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNI 644
           EE++  Q+  +KLR     E  D +L +  FG TE N+
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDAKLDLFVFGSTENNL 100


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 579 KLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKE 680
           +L E  D  L  ETFGV+ G+IG+  +F  TT +
Sbjct: 39  QLNEAGD-ELNDETFGVSAGSIGRDFDFSGTTAQ 71


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 122 YT*VLLLSRKRRLWRHLVSDKSLSIVVRFWCS-GEKFSY*FG 244
           Y  V L+ R      HL SD+S  IVV  W   G K  Y  G
Sbjct: 203 YEDVYLVERATGRIEHLASDQSKKIVVAEWSPIGHKLVYGLG 244


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 516 TEKTAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNF 662
           T +T     P   LA+  +QQ    ++DLR+ ++   +T G +  +D F
Sbjct: 224 TSETVYAHEPSDSLAKASKQQIPTVQNDLRILIK-LDITIGRLNLIDQF 271


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 161 WRHLVSDKSLSIVVRFWCSGEKF 229
           WR  ++ +  ++++R W SGEKF
Sbjct: 576 WR--INQRLFNVLIRIWNSGEKF 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,180
Number of Sequences: 5004
Number of extensions: 43698
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)