Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0405
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823,117...    40   0.002
05_01_0228 + 1692117-1692924,1693321-1693431,1693536-1693675,169...    31   1.1  
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    31   1.1  
06_01_0789 - 5901888-5902940,5903685-5903824,5904606-5904665,590...    30   2.0  
04_03_0021 - 9548600-9548794,9548851-9549006                           28   7.9  

>02_01_0170 -
           1174224-1174321,1174429-1174588,1174673-1174823,
           1175005-1175156,1175647-1175768,1176773-1176785
          Length = 231

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +3

Query: 561 EKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEE 683
           EKLRQQ+L EE+D +   E FG  +G+   LD F P ++ +
Sbjct: 90  EKLRQQRLVEEADFKSTTELFGKKDGSEKSLDTFIPKSESD 130



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +3

Query: 279 WDADNFEPKLPTTLA--ASNKWEGED-EDDNV 365
           WD+++F+P +P+  A    +KW  ED E+D+V
Sbjct: 4   WDSEDFQPAVPSAKAEPLKSKWADEDVEEDDV 35


>05_01_0228 +
           1692117-1692924,1693321-1693431,1693536-1693675,
           1693865-1694075,1694148-1694415,1694543-1694696,
           1694795-1695123,1695748-1695835
          Length = 702

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 655 SSLPMLPSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVISSA 527
           SS   LPSV+P+V  A++        CWRS +A  C+  +++A
Sbjct: 191 SSASALPSVSPRVYAAAQ--------CWRSLNATACAACVATA 225


>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
            3242494-3242836,3244138-3248540,3248928-3249107,
            3249108-3250892,3251055-3252173
          Length = 2727

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
 Frame = +3

Query: 510  LVTEKTAEEM-TPEQKLAEK-----LRQQKLQEESDLRLAMETFGVTEGNI 644
            L  EK  E+M T EQKLA+K       Q  LQ+E   R+ +ET  ++ GN+
Sbjct: 1136 LELEKAEEKMQTMEQKLADKNEMVDFLQLSLQDEGKKRVEVETALISSGNL 1186


>06_01_0789 -
           5901888-5902940,5903685-5903824,5904606-5904665,
           5904794-5904854
          Length = 437

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +3

Query: 528 AEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLD 656
           ++ +T +  L ++L   ++QEESDLR+ ++ F     ++ KLD
Sbjct: 107 SKSLTSKLYLKQQLYGLQMQEESDLRMHVDVFNQLIVDLSKLD 149


>04_03_0021 - 9548600-9548794,9548851-9549006
          Length = 116

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +3

Query: 525 TAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKE 680
           T +++TPEQK   + RQ  + +   ++L  +  G +    G++     +T +
Sbjct: 39  TLDKLTPEQKKDLETRQGTIVQRYKMKLVADVAGTSSSKDGEIQQVSDSTTQ 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,614,471
Number of Sequences: 37544
Number of extensions: 274968
Number of successful extensions: 856
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)