Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0405
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   66   2e-11
SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)                 29   2.7  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        29   4.6  
SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_51217| Best HMM Match : TUDOR (HMM E-Value=0)                       28   8.1  
SB_49003| Best HMM Match : Lectin_C (HMM E-Value=1e-09)                28   8.1  

>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 45/142 (31%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
 Frame = +3

Query: 282  DADNFEPKLPTTLAASNKWEGEDEDDNVXXXXXXXXXXXXXXXXXXAAXXXXXXXXXXIH 461
            D + FEP        ++KWEGEDEDD++                              + 
Sbjct: 1097 DDEKFEPGEVPADGVTDKWEGEDEDDDIKESWDDDDEDEKKEDEAKNTEAAAPKKKKTLK 1156

Query: 462  DKIXXXXXXXXXXXXXLVTEKTA-----EEMTPEQKLAEKLRQQKLQEESDLRLAMETFG 626
              +                EK       +E+TPE+++AEKLR+QK+ EESDL +AM+TFG
Sbjct: 1157 QILKEKEEQKLLEEKRKAEEKQKLEEEDKELTPEEQMAEKLRRQKIVEESDLLVAMDTFG 1216

Query: 627  V---TEGNIGKLDNFHPTTKEE 683
            V    E +   LD+  P+TKEE
Sbjct: 1217 VGTQEEASRTGLDSMIPSTKEE 1238


>SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)
          Length = 326

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 619 VSMASRKSDSSCSFCWRSFSANFCSGVISSAVFSVTRRSAFSRSCRS 479
           V +AS+  DSS  FC+  +  N C  ++ S      +R  F   CR+
Sbjct: 12  VLIASQIQDSSGGFCYEKYKNNSCRSLLKSG----GKRVTFDECCRN 54


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 282 PMTRPFLGLQNQQPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 124
           P    F+   N         SP +  N TT+DS +SLTR L S   + +  T +
Sbjct: 710 PYNTTFIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIPSISTSI 763



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 282  PMTRPFLGLQNQQPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 124
            P    F+   N         SP +  N TT+DS +SLTR L S   + +  T +
Sbjct: 1715 PYNTMFIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIPSISTSI 1768


>SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/35 (25%), Positives = 25/35 (71%)
 Frame = +3

Query: 537 MTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGN 641
           ++PE ++ ++LRQ+ L++ S +++  ++ G+  G+
Sbjct: 34  LSPENRVVQQLRQELLKKSSGIKILPKSEGIPNGD 68


>SB_51217| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 652

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 99  KSSSV*RITLEFCCCLENDDSGDIL*V-ISHCR*LSDFGVQVKSFHINSAADSGVLKMD 272
           K  SV  + L FC      D G  + V +SH   L DF VQ+KSF    A    +L  D
Sbjct: 38  KGGSVKTVEL-FCLTSRMPDIGTTVEVYVSHINNLDDFYVQLKSFEDKLAELQDLLMKD 95


>SB_49003| Best HMM Match : Lectin_C (HMM E-Value=1e-09)
          Length = 130

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 255 QNQQPN*YENFSPEHQNRTTIDSDLSLTRCLQSRRFLD 142
           Q+ +P  Y+NF+P H N    D+D  + R     ++ D
Sbjct: 78  QDSEPASYQNFAPGHPNSPGDDTDCVVARDSDEGKWAD 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,237,091
Number of Sequences: 59808
Number of extensions: 338299
Number of successful extensions: 938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)