Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0405
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002719-1|AAH02719.1|  258|Homo sapiens eukaryotic translation ...    65   3e-10
AK023388-1|BAB14555.1|  258|Homo sapiens protein ( Homo sapiens ...    64   4e-10
U97670-1|AAC78729.1|  258|Homo sapiens eukaryotic translation in...    62   2e-09
AL008583-2|CAA15430.2|  488|Homo sapiens neuronal pentraxin rece...    32   1.7  
BC014001-1|AAH14001.2|  445|Homo sapiens UBX domain containing 8...    31   2.9  
BC006145-1|AAH06145.2|  445|Homo sapiens UBX domain containing 8...    31   2.9  
BC001069-1|AAH01069.2|  445|Homo sapiens UBX domain containing 8...    31   2.9  
AB088120-1|BAC22491.1|  445|Homo sapiens ETEA protein.                 31   2.9  
AB020694-1|BAA74910.1|  443|Homo sapiens KIAA0887 protein protein.     31   2.9  

>BC002719-1|AAH02719.1|  258|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 1 alpha, 35kDa protein.
          Length = 258

 Score = 64.9 bits (151), Expect = 3e-10
 Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
 Frame = +3

Query: 276 SWDADNFEPKLPTT------LAASNKWEGEDEDDNVXXXXXXXXXXXXXXXXXX--AAXX 431
           SWDAD F  + P         A  ++WEGEDED++V                        
Sbjct: 13  SWDADAFSVEDPVRKVGGGGTAGGDRWEGEDEDEDVKDNWDDDDDEKKEEAEVKPEVKIS 72

Query: 432 XXXXXXXXIHDKIXXXXXXXXXXXXXLVTEKTAEEMTPEQKLAEKLRQQKLQEESDLRLA 611
                   I +K              L   +  + +TPE++LA+KLR +KLQEESDL LA
Sbjct: 73  EKKKIAEKIKEKERQQKKRQEEIKKRLEEPEEPKVLTPEEQLADKLRLKKLQEESDLELA 132

Query: 612 METFGVTEGNIGKLDNFHPTTKEE 683
            ETFGV     G +D  +P+++++
Sbjct: 133 KETFGVNNAVYG-IDAMNPSSRDD 155


>AK023388-1|BAB14555.1|  258|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13326 fis, clone OVARC1001766, highly similar to
           Homo sapiens eukaryotic translation initiation factor
           eIF3, p35 ).
          Length = 258

 Score = 64.1 bits (149), Expect = 4e-10
 Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
 Frame = +3

Query: 276 SWDADNFEPKLPTT------LAASNKWEGEDEDDNVXXXXXXXXXXXXXXXXXX--AAXX 431
           SWDAD F  + P         A  ++WEGEDED++V                        
Sbjct: 13  SWDADAFSVEDPVRKVGGGGTAGGDRWEGEDEDEDVKDNWDDDDDEKKEEAEVKPEVKIS 72

Query: 432 XXXXXXXXIHDKIXXXXXXXXXXXXXLVTEKTAEEMTPEQKLAEKLRQQKLQEESDLRLA 611
                   I +K              L   +  + +TPE++LA+KLR +KLQEESDL LA
Sbjct: 73  EKKKIAEKIKEKERQQKKRQEEIKKRLEEPEEPKVLTPEEQLADKLRLKKLQEESDLELA 132

Query: 612 METFGVTEGNIGKLDNFHPTTKEE 683
            ETFGV     G +D  +P+++++
Sbjct: 133 KETFGVNNTVYG-IDAMNPSSRDD 155


>U97670-1|AAC78729.1|  258|Homo sapiens eukaryotic translation
           initiation factor eIF3, p35 subunit protein.
          Length = 258

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 8/144 (5%)
 Frame = +3

Query: 276 SWDADNFEPKLPTT------LAASNKWEGEDEDDNVXXXXXXXXXXXXXXXXXX--AAXX 431
           SWDAD F  + P         A  ++W GEDED++V                        
Sbjct: 13  SWDADAFSVEDPVRKVGGGGTAGGDRWGGEDEDEDVKDNWDDDDDEKKEEAEVKPEVKIS 72

Query: 432 XXXXXXXXIHDKIXXXXXXXXXXXXXLVTEKTAEEMTPEQKLAEKLRQQKLQEESDLRLA 611
                   I +K              L   +  + +TPE++LA+KLR +KLQEESDL LA
Sbjct: 73  EKKKIAEKIKEKERQQKKRQEEIKKRLEEPEEPKVLTPEEQLADKLRLKKLQEESDLELA 132

Query: 612 METFGVTEGNIGKLDNFHPTTKEE 683
            ETFGV     G +D  +P+++++
Sbjct: 133 KETFGVNNAVYG-IDAMNPSSRDD 155


>AL008583-2|CAA15430.2|  488|Homo sapiens neuronal pentraxin
           receptor protein.
          Length = 488

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 531 EEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHP 668
           EE+   Q  AE+LRQ  LQ+E+ +R   +T     G +G+ ++  P
Sbjct: 110 EELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLP 155


>BC014001-1|AAH14001.2|  445|Homo sapiens UBX domain containing 8
           protein.
          Length = 445

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 519 EKTAEEMTPEQKLAEKLRQQKLQEESDLRL 608
           ++  EE   +QKLAE+ R+Q LQEE + +L
Sbjct: 318 KRRKEEEVQQQKLAEERRRQNLQEEKERKL 347


>BC006145-1|AAH06145.2|  445|Homo sapiens UBX domain containing 8
           protein.
          Length = 445

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 519 EKTAEEMTPEQKLAEKLRQQKLQEESDLRL 608
           ++  EE   +QKLAE+ R+Q LQEE + +L
Sbjct: 318 KRRKEEEVQQQKLAEERRRQNLQEEKERKL 347


>BC001069-1|AAH01069.2|  445|Homo sapiens UBX domain containing 8
           protein.
          Length = 445

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 519 EKTAEEMTPEQKLAEKLRQQKLQEESDLRL 608
           ++  EE   +QKLAE+ R+Q LQEE + +L
Sbjct: 318 KRRKEEEVQQQKLAEERRRQNLQEEKERKL 347


>AB088120-1|BAC22491.1|  445|Homo sapiens ETEA protein.
          Length = 445

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 519 EKTAEEMTPEQKLAEKLRQQKLQEESDLRL 608
           ++  EE   +QKLAE+ R+Q LQEE + +L
Sbjct: 318 KRRKEEEVQQQKLAEERRRQNLQEEKERKL 347


>AB020694-1|BAA74910.1|  443|Homo sapiens KIAA0887 protein protein.
          Length = 443

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 519 EKTAEEMTPEQKLAEKLRQQKLQEESDLRL 608
           ++  EE   +QKLAE+ R+Q LQEE + +L
Sbjct: 316 KRRKEEEVQQQKLAEERRRQNLQEEKERKL 345


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,563,123
Number of Sequences: 237096
Number of extensions: 1560787
Number of successful extensions: 4053
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4051
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)