Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0405
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039711-2|AAB96710.1|  416|Caenorhabditis elegans Hypothetical ...    30   1.3  
AL021180-1|CAA15980.1|  383|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF303252-1|AAG50210.1|  383|Caenorhabditis elegans 3E324 protein.      28   7.1  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation...    28   7.1  

>AF039711-2|AAB96710.1|  416|Caenorhabditis elegans Hypothetical
           protein F49D11.4 protein.
          Length = 416

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 155 RLWRHLVSDKSLSIVVRFWCSGE 223
           RLWRH  + K L+ V+R W S +
Sbjct: 311 RLWRHSFTPKGLNQVIRLWLSSD 333


>AL021180-1|CAA15980.1|  383|Caenorhabditis elegans Hypothetical
           protein Y44F5A.1 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 219 VKSFHINSAADSGVLKMDVSWDADNFEPKLPTTLAASNKWEGEDEDDN 362
           +KS  + +A +SG +K   +W   N +P++ +  A   KW+ +DED N
Sbjct: 108 LKSQQLATADESGEVK---TW---NLDPEVASENANIRKWQEQDEDIN 149


>AF303252-1|AAG50210.1|  383|Caenorhabditis elegans 3E324 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 219 VKSFHINSAADSGVLKMDVSWDADNFEPKLPTTLAASNKWEGEDEDDN 362
           +KS  + +A +SG +K   +W   N +P++ +  A   KW+ +DED N
Sbjct: 108 LKSQQLATADESGEVK---TW---NLDPEVASENANIRKWQEQDEDIN 149


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -3

Query: 251 ISSRINMKTFHLNTKIGQLSTVTY--HSQDVSRVVVF*TTTKLKCNSSD*RRFSAIITVG 78
           I  +++   F   T++   S  T    S + +RV+ F T+T+L+  S          TVG
Sbjct: 635 IFEKLSTTLFFEETQVTSTSDFTSSPRSIETTRVIEFDTSTELQTTSKTSTTTEDTTTVG 694

Query: 77  LKNNEQMT*YWR 42
                +M  +WR
Sbjct: 695 TTTEMEMRRFWR 706


>AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation
           defective protein 1 protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 222 KSFHINSAADSGVLKMDVSWDADNFEPKLP 311
           +S  ++S ++SGV    VS D D+F P LP
Sbjct: 42  QSVSVSSKSESGVSSSAVSDDEDDFMPDLP 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,639,500
Number of Sequences: 27780
Number of extensions: 249478
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)