Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0404
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    26   0.31 
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.71 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.71 
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   2.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   3.8  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    22   5.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   6.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   6.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   6.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   6.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   6.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   6.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   6.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   6.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 324 RCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSP 419
           R  R VVPP   C  P+T+ P P     D++ P
Sbjct: 195 RSLRCVVPPTEDCDVPSTIPPPPPEEDDDSNIP 227


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 125 IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 220
           +VT+W + E+I++     +L V     PV+LT
Sbjct: 158 VVTDWVNFERIYYKLTKKKLSVFFGNKPVILT 189


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 582 WPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAAST 728
           +PPL    P      FP    +PS   +S AQ +  N + WV  + A T
Sbjct: 174 YPPLPQVPPLPLPPIFPPTMINPSAICESAAQLIFMNVQ-WVRSIPAFT 221


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 580 LLLEVESDVAQLLLDVTNDFP 518
           L+ + E++  ++LLDV N FP
Sbjct: 465 LVYQNEAEEVKILLDVINHFP 485


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 241 GQQREDDPDHVRNIQHARHVRRHPSRA 321
           GQ    DP+ V   +   H+  HP +A
Sbjct: 903 GQYTTKDPNEVTCDEEEGHISYHPDKA 929


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 94  PDPQIPHRTRNRH 132
           PD  +P RT NRH
Sbjct: 110 PDNFLPERTANRH 122


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 291 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 428
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASS 172


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 291 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 428
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 291 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 428
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 291 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 428
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 291 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 428
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 291 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 428
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 83  PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 128


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 291 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 428
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 291 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 428
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 209 RGVPRGRHAAHCRRYDAKSSP 147
           RG P    AA C +   KS P
Sbjct: 33  RGTPLAMLAAQCNKLSNKSPP 53


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 163 MPNLLHVIPVSDDSVFD 113
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 163 MPNLLHVIPVSDDSVFD 113
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 163 MPNLLHVIPVSDDSVFD 113
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 163 MPNLLHVIPVSDDSVFD 113
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,802
Number of Sequences: 336
Number of extensions: 4855
Number of successful extensions: 32
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)