Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0404
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             158   5e-41
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        27   0.20 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.3  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   4.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  158 bits (384), Expect = 5e-41
 Identities = 74/75 (98%), Positives = 74/75 (98%)
 Frame = +2

Query: 578 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSFMKC 757
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNS MKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 758 DVDIRKDLYANTVLS 802
           DVDIRKDLYANTVLS
Sbjct: 61  DVDIRKDLYANTVLS 75


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +3

Query: 543 RSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAA 722
           ++C TS +T+S     L  AA + +  N+    +SPS T  S     SS   S   +  +
Sbjct: 28  QACTTSPATASLE-SSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTS 86

Query: 723 STRPHIT 743
           S  P+++
Sbjct: 87  SMYPYVS 93


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = +1

Query: 412 TP-PRHPASGLGRS*PHRLPHEDPHRARLLVHYH 510
           TP P H   G G S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 182  LRVAPEEHPVLLTEAPLNPKANREKM 259
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 120 CSMGYLRVRIXIXSCRIXCSPG 55
           C +GYLR +  +   R  C PG
Sbjct: 73  CRLGYLRNKKKVCVPRSKCLPG 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,467
Number of Sequences: 438
Number of extensions: 6066
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)